Cargando…

IMG-06. PREDICTING SURVIVAL FROM PERFUSION AND DIFFUSION MRI BY MACHINE LEARNING

INTRODUCTION: Magnetic Resonance Imaging (MRI) is routinely used in the assessment of children’s brain tumours. Reduced diffusion and increased perfusion on MRI are commonly associated with higher grade but there is a lack of quantitative data linking these parameters to survival. Machine learning i...

Descripción completa

Detalles Bibliográficos
Autores principales: Grist, James T, Withey, Stephanie, Bennett, Christopher, Rose, Heather, MacPherson, Lesley, Oates, Adam, Powell, Stephen, Novak, Jan, Abernethy, Laurence, Pizer, Barry, Bailey, Simon, Mitra, Dipayan, Arvanitis, Theodoros N, Auer, Dorothee P, Avula, Shivaram, Grundy, Richard, Peet, Andrew C
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7715839/
http://dx.doi.org/10.1093/neuonc/noaa222.342
_version_ 1783619049557590016
author Grist, James T
Withey, Stephanie
Bennett, Christopher
Rose, Heather
MacPherson, Lesley
Oates, Adam
Powell, Stephen
Novak, Jan
Abernethy, Laurence
Pizer, Barry
Bailey, Simon
Mitra, Dipayan
Arvanitis, Theodoros N
Auer, Dorothee P
Avula, Shivaram
Grundy, Richard
Peet, Andrew C
author_facet Grist, James T
Withey, Stephanie
Bennett, Christopher
Rose, Heather
MacPherson, Lesley
Oates, Adam
Powell, Stephen
Novak, Jan
Abernethy, Laurence
Pizer, Barry
Bailey, Simon
Mitra, Dipayan
Arvanitis, Theodoros N
Auer, Dorothee P
Avula, Shivaram
Grundy, Richard
Peet, Andrew C
author_sort Grist, James T
collection PubMed
description INTRODUCTION: Magnetic Resonance Imaging (MRI) is routinely used in the assessment of children’s brain tumours. Reduced diffusion and increased perfusion on MRI are commonly associated with higher grade but there is a lack of quantitative data linking these parameters to survival. Machine learning is increasingly being used to develop diagnostic tools but its use in survival analysis is rare. In this study we combine quantitative parameters from diffusion and perfusion MRI with machine learning to develop a model of survival for paediatric brain tumours. METHOD: 69 children from 4 centres (Birmingham, Liverpool, Nottingham, Newcastle) underwent MRI with diffusion and perfusion (dynamic susceptibility contrast) at diagnosis. Images were processed to form ADC, cerebral blood volume (CBV) and vessel leakage correction (K2) parameter maps. Parameter mean, standard deviation and heterogeneity measures (skewness and kurtosis) were calculated from tumour and whole brain and used in iterative Bayesian survival analysis. The features selected were used for k-means clustering and differences in survival between clusters assessed by Kaplan-Meier and Cox-regression. RESULTS: Bayesian analysis revealed the 5 top features determining survival to be tumour volume, ADC kurtosis, CBV mean, K2 mean and whole brain CBV mean. K-means clustering using these features showed two distinct clusters (high- and low-risk) which bore significantly different survival characteristics (Hazard Ratio = 5.6). DISCUSSION AND CONCLUSION: Diffusion and perfusion MRI can be used to aid the prediction of survival in children’s brain tumours. Tumour perfusion played a particularly important role in predicting survival despite being less routinely measured than diffusion.
format Online
Article
Text
id pubmed-7715839
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher Oxford University Press
record_format MEDLINE/PubMed
spelling pubmed-77158392020-12-09 IMG-06. PREDICTING SURVIVAL FROM PERFUSION AND DIFFUSION MRI BY MACHINE LEARNING Grist, James T Withey, Stephanie Bennett, Christopher Rose, Heather MacPherson, Lesley Oates, Adam Powell, Stephen Novak, Jan Abernethy, Laurence Pizer, Barry Bailey, Simon Mitra, Dipayan Arvanitis, Theodoros N Auer, Dorothee P Avula, Shivaram Grundy, Richard Peet, Andrew C Neuro Oncol Imaging INTRODUCTION: Magnetic Resonance Imaging (MRI) is routinely used in the assessment of children’s brain tumours. Reduced diffusion and increased perfusion on MRI are commonly associated with higher grade but there is a lack of quantitative data linking these parameters to survival. Machine learning is increasingly being used to develop diagnostic tools but its use in survival analysis is rare. In this study we combine quantitative parameters from diffusion and perfusion MRI with machine learning to develop a model of survival for paediatric brain tumours. METHOD: 69 children from 4 centres (Birmingham, Liverpool, Nottingham, Newcastle) underwent MRI with diffusion and perfusion (dynamic susceptibility contrast) at diagnosis. Images were processed to form ADC, cerebral blood volume (CBV) and vessel leakage correction (K2) parameter maps. Parameter mean, standard deviation and heterogeneity measures (skewness and kurtosis) were calculated from tumour and whole brain and used in iterative Bayesian survival analysis. The features selected were used for k-means clustering and differences in survival between clusters assessed by Kaplan-Meier and Cox-regression. RESULTS: Bayesian analysis revealed the 5 top features determining survival to be tumour volume, ADC kurtosis, CBV mean, K2 mean and whole brain CBV mean. K-means clustering using these features showed two distinct clusters (high- and low-risk) which bore significantly different survival characteristics (Hazard Ratio = 5.6). DISCUSSION AND CONCLUSION: Diffusion and perfusion MRI can be used to aid the prediction of survival in children’s brain tumours. Tumour perfusion played a particularly important role in predicting survival despite being less routinely measured than diffusion. Oxford University Press 2020-12-04 /pmc/articles/PMC7715839/ http://dx.doi.org/10.1093/neuonc/noaa222.342 Text en © The Author(s) 2020. Published by Oxford University Press on behalf of the Society for Neuro-Oncology. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Imaging
Grist, James T
Withey, Stephanie
Bennett, Christopher
Rose, Heather
MacPherson, Lesley
Oates, Adam
Powell, Stephen
Novak, Jan
Abernethy, Laurence
Pizer, Barry
Bailey, Simon
Mitra, Dipayan
Arvanitis, Theodoros N
Auer, Dorothee P
Avula, Shivaram
Grundy, Richard
Peet, Andrew C
IMG-06. PREDICTING SURVIVAL FROM PERFUSION AND DIFFUSION MRI BY MACHINE LEARNING
title IMG-06. PREDICTING SURVIVAL FROM PERFUSION AND DIFFUSION MRI BY MACHINE LEARNING
title_full IMG-06. PREDICTING SURVIVAL FROM PERFUSION AND DIFFUSION MRI BY MACHINE LEARNING
title_fullStr IMG-06. PREDICTING SURVIVAL FROM PERFUSION AND DIFFUSION MRI BY MACHINE LEARNING
title_full_unstemmed IMG-06. PREDICTING SURVIVAL FROM PERFUSION AND DIFFUSION MRI BY MACHINE LEARNING
title_short IMG-06. PREDICTING SURVIVAL FROM PERFUSION AND DIFFUSION MRI BY MACHINE LEARNING
title_sort img-06. predicting survival from perfusion and diffusion mri by machine learning
topic Imaging
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7715839/
http://dx.doi.org/10.1093/neuonc/noaa222.342
work_keys_str_mv AT gristjamest img06predictingsurvivalfromperfusionanddiffusionmribymachinelearning
AT witheystephanie img06predictingsurvivalfromperfusionanddiffusionmribymachinelearning
AT bennettchristopher img06predictingsurvivalfromperfusionanddiffusionmribymachinelearning
AT roseheather img06predictingsurvivalfromperfusionanddiffusionmribymachinelearning
AT macphersonlesley img06predictingsurvivalfromperfusionanddiffusionmribymachinelearning
AT oatesadam img06predictingsurvivalfromperfusionanddiffusionmribymachinelearning
AT powellstephen img06predictingsurvivalfromperfusionanddiffusionmribymachinelearning
AT novakjan img06predictingsurvivalfromperfusionanddiffusionmribymachinelearning
AT abernethylaurence img06predictingsurvivalfromperfusionanddiffusionmribymachinelearning
AT pizerbarry img06predictingsurvivalfromperfusionanddiffusionmribymachinelearning
AT baileysimon img06predictingsurvivalfromperfusionanddiffusionmribymachinelearning
AT mitradipayan img06predictingsurvivalfromperfusionanddiffusionmribymachinelearning
AT arvanitistheodorosn img06predictingsurvivalfromperfusionanddiffusionmribymachinelearning
AT auerdorotheep img06predictingsurvivalfromperfusionanddiffusionmribymachinelearning
AT avulashivaram img06predictingsurvivalfromperfusionanddiffusionmribymachinelearning
AT grundyrichard img06predictingsurvivalfromperfusionanddiffusionmribymachinelearning
AT peetandrewc img06predictingsurvivalfromperfusionanddiffusionmribymachinelearning