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Single-cell transcriptomics allows novel insights into aging and circadian processes
Aging and circadian rhythms are two biological processes that affect an organism, although at different time scales. Nevertheless, due to the overlap of their actions, it was speculated that both interfere or interact with each other. However, to address this question, a much deeper insight into the...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7716582/ https://www.ncbi.nlm.nih.gov/pubmed/32633783 http://dx.doi.org/10.1093/bfgp/elaa014 |
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author | Fonseca Costa, Sara S Robinson-Rechavi, Marc Ripperger, Jürgen A |
author_facet | Fonseca Costa, Sara S Robinson-Rechavi, Marc Ripperger, Jürgen A |
author_sort | Fonseca Costa, Sara S |
collection | PubMed |
description | Aging and circadian rhythms are two biological processes that affect an organism, although at different time scales. Nevertheless, due to the overlap of their actions, it was speculated that both interfere or interact with each other. However, to address this question, a much deeper insight into these processes is necessary, especially at the cellular level. New methods such as single-cell RNA-sequencing (scRNA-Seq) have the potential to close this gap in our knowledge. In this review, we analyze applications of scRNA-Seq from the aging and circadian rhythm fields and highlight new findings emerging from the analysis of single cells, especially in humans or rodents. Furthermore, we judge the potential of scRNA-Seq to identify common traits of both processes. Overall, this method offers several advantages over more traditional methods analyzing gene expression and will become an important tool to unravel the link between these biological processes. |
format | Online Article Text |
id | pubmed-7716582 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-77165822020-12-09 Single-cell transcriptomics allows novel insights into aging and circadian processes Fonseca Costa, Sara S Robinson-Rechavi, Marc Ripperger, Jürgen A Brief Funct Genomics Review Aging and circadian rhythms are two biological processes that affect an organism, although at different time scales. Nevertheless, due to the overlap of their actions, it was speculated that both interfere or interact with each other. However, to address this question, a much deeper insight into these processes is necessary, especially at the cellular level. New methods such as single-cell RNA-sequencing (scRNA-Seq) have the potential to close this gap in our knowledge. In this review, we analyze applications of scRNA-Seq from the aging and circadian rhythm fields and highlight new findings emerging from the analysis of single cells, especially in humans or rodents. Furthermore, we judge the potential of scRNA-Seq to identify common traits of both processes. Overall, this method offers several advantages over more traditional methods analyzing gene expression and will become an important tool to unravel the link between these biological processes. Oxford University Press 2020-07-07 /pmc/articles/PMC7716582/ /pubmed/32633783 http://dx.doi.org/10.1093/bfgp/elaa014 Text en © The Author(s) 2020. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Review Fonseca Costa, Sara S Robinson-Rechavi, Marc Ripperger, Jürgen A Single-cell transcriptomics allows novel insights into aging and circadian processes |
title | Single-cell transcriptomics allows novel insights into aging and circadian processes |
title_full | Single-cell transcriptomics allows novel insights into aging and circadian processes |
title_fullStr | Single-cell transcriptomics allows novel insights into aging and circadian processes |
title_full_unstemmed | Single-cell transcriptomics allows novel insights into aging and circadian processes |
title_short | Single-cell transcriptomics allows novel insights into aging and circadian processes |
title_sort | single-cell transcriptomics allows novel insights into aging and circadian processes |
topic | Review |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7716582/ https://www.ncbi.nlm.nih.gov/pubmed/32633783 http://dx.doi.org/10.1093/bfgp/elaa014 |
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