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Single-cell transcriptomics allows novel insights into aging and circadian processes

Aging and circadian rhythms are two biological processes that affect an organism, although at different time scales. Nevertheless, due to the overlap of their actions, it was speculated that both interfere or interact with each other. However, to address this question, a much deeper insight into the...

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Autores principales: Fonseca Costa, Sara S, Robinson-Rechavi, Marc, Ripperger, Jürgen A
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7716582/
https://www.ncbi.nlm.nih.gov/pubmed/32633783
http://dx.doi.org/10.1093/bfgp/elaa014
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author Fonseca Costa, Sara S
Robinson-Rechavi, Marc
Ripperger, Jürgen A
author_facet Fonseca Costa, Sara S
Robinson-Rechavi, Marc
Ripperger, Jürgen A
author_sort Fonseca Costa, Sara S
collection PubMed
description Aging and circadian rhythms are two biological processes that affect an organism, although at different time scales. Nevertheless, due to the overlap of their actions, it was speculated that both interfere or interact with each other. However, to address this question, a much deeper insight into these processes is necessary, especially at the cellular level. New methods such as single-cell RNA-sequencing (scRNA-Seq) have the potential to close this gap in our knowledge. In this review, we analyze applications of scRNA-Seq from the aging and circadian rhythm fields and highlight new findings emerging from the analysis of single cells, especially in humans or rodents. Furthermore, we judge the potential of scRNA-Seq to identify common traits of both processes. Overall, this method offers several advantages over more traditional methods analyzing gene expression and will become an important tool to unravel the link between these biological processes.
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spelling pubmed-77165822020-12-09 Single-cell transcriptomics allows novel insights into aging and circadian processes Fonseca Costa, Sara S Robinson-Rechavi, Marc Ripperger, Jürgen A Brief Funct Genomics Review Aging and circadian rhythms are two biological processes that affect an organism, although at different time scales. Nevertheless, due to the overlap of their actions, it was speculated that both interfere or interact with each other. However, to address this question, a much deeper insight into these processes is necessary, especially at the cellular level. New methods such as single-cell RNA-sequencing (scRNA-Seq) have the potential to close this gap in our knowledge. In this review, we analyze applications of scRNA-Seq from the aging and circadian rhythm fields and highlight new findings emerging from the analysis of single cells, especially in humans or rodents. Furthermore, we judge the potential of scRNA-Seq to identify common traits of both processes. Overall, this method offers several advantages over more traditional methods analyzing gene expression and will become an important tool to unravel the link between these biological processes. Oxford University Press 2020-07-07 /pmc/articles/PMC7716582/ /pubmed/32633783 http://dx.doi.org/10.1093/bfgp/elaa014 Text en © The Author(s) 2020. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Review
Fonseca Costa, Sara S
Robinson-Rechavi, Marc
Ripperger, Jürgen A
Single-cell transcriptomics allows novel insights into aging and circadian processes
title Single-cell transcriptomics allows novel insights into aging and circadian processes
title_full Single-cell transcriptomics allows novel insights into aging and circadian processes
title_fullStr Single-cell transcriptomics allows novel insights into aging and circadian processes
title_full_unstemmed Single-cell transcriptomics allows novel insights into aging and circadian processes
title_short Single-cell transcriptomics allows novel insights into aging and circadian processes
title_sort single-cell transcriptomics allows novel insights into aging and circadian processes
topic Review
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7716582/
https://www.ncbi.nlm.nih.gov/pubmed/32633783
http://dx.doi.org/10.1093/bfgp/elaa014
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