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The complete chloroplast genome sequence of Laplacea alpestris and its phylogenetic position
Laplacea alpestris is a member of the genus Laplacea, which distributes in Central and South America. Genetic information of L. alpestris would provide guidance for the phylogenetic position of this species. Here, we reported and characterized its complete chloroplast (cp) genome using Illumina pair...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7717450/ https://www.ncbi.nlm.nih.gov/pubmed/33367108 http://dx.doi.org/10.1080/23802359.2020.1837687 |
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author | Yu, Xiang-Qin Zhang, Qiong Jiang, Yin-Zi Peng, Hua Zhao, Jian-Li Yang, Shi-Xiong |
author_facet | Yu, Xiang-Qin Zhang, Qiong Jiang, Yin-Zi Peng, Hua Zhao, Jian-Li Yang, Shi-Xiong |
author_sort | Yu, Xiang-Qin |
collection | PubMed |
description | Laplacea alpestris is a member of the genus Laplacea, which distributes in Central and South America. Genetic information of L. alpestris would provide guidance for the phylogenetic position of this species. Here, we reported and characterized its complete chloroplast (cp) genome using Illumina pair-end sequencing data. The total chloroplast genome size of this species was 157,211 bp, including inverted repeats (IRs) of 26,103 bp, separated by a large single copy (LSC) and a small single copy (SSC) of 86,749 and 18,256 bp, respectively. A total of 132 genes, including 37 tRNA, 8 rRNA, and 87 protein-coding genes were identified. Phylogenetic analysis showed that L. alpestris formed a monophyletic clade with Laplacea fruticosa, and then grouped with Apterosperma oblata. The systematic position of Southeast Asian Laplacea species needs further studies. |
format | Online Article Text |
id | pubmed-7717450 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77174502020-12-22 The complete chloroplast genome sequence of Laplacea alpestris and its phylogenetic position Yu, Xiang-Qin Zhang, Qiong Jiang, Yin-Zi Peng, Hua Zhao, Jian-Li Yang, Shi-Xiong Mitochondrial DNA B Resour Mitogenome Announcement Laplacea alpestris is a member of the genus Laplacea, which distributes in Central and South America. Genetic information of L. alpestris would provide guidance for the phylogenetic position of this species. Here, we reported and characterized its complete chloroplast (cp) genome using Illumina pair-end sequencing data. The total chloroplast genome size of this species was 157,211 bp, including inverted repeats (IRs) of 26,103 bp, separated by a large single copy (LSC) and a small single copy (SSC) of 86,749 and 18,256 bp, respectively. A total of 132 genes, including 37 tRNA, 8 rRNA, and 87 protein-coding genes were identified. Phylogenetic analysis showed that L. alpestris formed a monophyletic clade with Laplacea fruticosa, and then grouped with Apterosperma oblata. The systematic position of Southeast Asian Laplacea species needs further studies. Taylor & Francis 2020-11-22 /pmc/articles/PMC7717450/ /pubmed/33367108 http://dx.doi.org/10.1080/23802359.2020.1837687 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Yu, Xiang-Qin Zhang, Qiong Jiang, Yin-Zi Peng, Hua Zhao, Jian-Li Yang, Shi-Xiong The complete chloroplast genome sequence of Laplacea alpestris and its phylogenetic position |
title | The complete chloroplast genome sequence of Laplacea alpestris and its phylogenetic position |
title_full | The complete chloroplast genome sequence of Laplacea alpestris and its phylogenetic position |
title_fullStr | The complete chloroplast genome sequence of Laplacea alpestris and its phylogenetic position |
title_full_unstemmed | The complete chloroplast genome sequence of Laplacea alpestris and its phylogenetic position |
title_short | The complete chloroplast genome sequence of Laplacea alpestris and its phylogenetic position |
title_sort | complete chloroplast genome sequence of laplacea alpestris and its phylogenetic position |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7717450/ https://www.ncbi.nlm.nih.gov/pubmed/33367108 http://dx.doi.org/10.1080/23802359.2020.1837687 |
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