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The complete chloroplast genome sequence of Laplacea alpestris and its phylogenetic position

Laplacea alpestris is a member of the genus Laplacea, which distributes in Central and South America. Genetic information of L. alpestris would provide guidance for the phylogenetic position of this species. Here, we reported and characterized its complete chloroplast (cp) genome using Illumina pair...

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Autores principales: Yu, Xiang-Qin, Zhang, Qiong, Jiang, Yin-Zi, Peng, Hua, Zhao, Jian-Li, Yang, Shi-Xiong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7717450/
https://www.ncbi.nlm.nih.gov/pubmed/33367108
http://dx.doi.org/10.1080/23802359.2020.1837687
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author Yu, Xiang-Qin
Zhang, Qiong
Jiang, Yin-Zi
Peng, Hua
Zhao, Jian-Li
Yang, Shi-Xiong
author_facet Yu, Xiang-Qin
Zhang, Qiong
Jiang, Yin-Zi
Peng, Hua
Zhao, Jian-Li
Yang, Shi-Xiong
author_sort Yu, Xiang-Qin
collection PubMed
description Laplacea alpestris is a member of the genus Laplacea, which distributes in Central and South America. Genetic information of L. alpestris would provide guidance for the phylogenetic position of this species. Here, we reported and characterized its complete chloroplast (cp) genome using Illumina pair-end sequencing data. The total chloroplast genome size of this species was 157,211 bp, including inverted repeats (IRs) of 26,103 bp, separated by a large single copy (LSC) and a small single copy (SSC) of 86,749 and 18,256 bp, respectively. A total of 132 genes, including 37 tRNA, 8 rRNA, and 87 protein-coding genes were identified. Phylogenetic analysis showed that L. alpestris formed a monophyletic clade with Laplacea fruticosa, and then grouped with Apterosperma oblata. The systematic position of Southeast Asian Laplacea species needs further studies.
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spelling pubmed-77174502020-12-22 The complete chloroplast genome sequence of Laplacea alpestris and its phylogenetic position Yu, Xiang-Qin Zhang, Qiong Jiang, Yin-Zi Peng, Hua Zhao, Jian-Li Yang, Shi-Xiong Mitochondrial DNA B Resour Mitogenome Announcement Laplacea alpestris is a member of the genus Laplacea, which distributes in Central and South America. Genetic information of L. alpestris would provide guidance for the phylogenetic position of this species. Here, we reported and characterized its complete chloroplast (cp) genome using Illumina pair-end sequencing data. The total chloroplast genome size of this species was 157,211 bp, including inverted repeats (IRs) of 26,103 bp, separated by a large single copy (LSC) and a small single copy (SSC) of 86,749 and 18,256 bp, respectively. A total of 132 genes, including 37 tRNA, 8 rRNA, and 87 protein-coding genes were identified. Phylogenetic analysis showed that L. alpestris formed a monophyletic clade with Laplacea fruticosa, and then grouped with Apterosperma oblata. The systematic position of Southeast Asian Laplacea species needs further studies. Taylor & Francis 2020-11-22 /pmc/articles/PMC7717450/ /pubmed/33367108 http://dx.doi.org/10.1080/23802359.2020.1837687 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Yu, Xiang-Qin
Zhang, Qiong
Jiang, Yin-Zi
Peng, Hua
Zhao, Jian-Li
Yang, Shi-Xiong
The complete chloroplast genome sequence of Laplacea alpestris and its phylogenetic position
title The complete chloroplast genome sequence of Laplacea alpestris and its phylogenetic position
title_full The complete chloroplast genome sequence of Laplacea alpestris and its phylogenetic position
title_fullStr The complete chloroplast genome sequence of Laplacea alpestris and its phylogenetic position
title_full_unstemmed The complete chloroplast genome sequence of Laplacea alpestris and its phylogenetic position
title_short The complete chloroplast genome sequence of Laplacea alpestris and its phylogenetic position
title_sort complete chloroplast genome sequence of laplacea alpestris and its phylogenetic position
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7717450/
https://www.ncbi.nlm.nih.gov/pubmed/33367108
http://dx.doi.org/10.1080/23802359.2020.1837687
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