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MANTA, an integrative database and analysis platform that relates microbiome and phenotypic data

With an ever-increasing interest in understanding the relationships between the microbiota and the host, more tools to map, analyze and interpret these relationships have been developed. Most of these tools, however, focus on taxonomic profiling and comparative analysis among groups, with very few a...

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Autores principales: Chen, Yi-An, Park, Jonguk, Natsume-Kitatani, Yayoi, Kawashima, Hitoshi, Mohsen, Attayeb, Hosomi, Koji, Tanisawa, Kumpei, Ohno, Harumi, Konishi, Kana, Murakami, Haruka, Miyachi, Motohiko, Kunisawa, Jun, Mizuguchi, Kenji
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7717536/
https://www.ncbi.nlm.nih.gov/pubmed/33275647
http://dx.doi.org/10.1371/journal.pone.0243609
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author Chen, Yi-An
Park, Jonguk
Natsume-Kitatani, Yayoi
Kawashima, Hitoshi
Mohsen, Attayeb
Hosomi, Koji
Tanisawa, Kumpei
Ohno, Harumi
Konishi, Kana
Murakami, Haruka
Miyachi, Motohiko
Kunisawa, Jun
Mizuguchi, Kenji
author_facet Chen, Yi-An
Park, Jonguk
Natsume-Kitatani, Yayoi
Kawashima, Hitoshi
Mohsen, Attayeb
Hosomi, Koji
Tanisawa, Kumpei
Ohno, Harumi
Konishi, Kana
Murakami, Haruka
Miyachi, Motohiko
Kunisawa, Jun
Mizuguchi, Kenji
author_sort Chen, Yi-An
collection PubMed
description With an ever-increasing interest in understanding the relationships between the microbiota and the host, more tools to map, analyze and interpret these relationships have been developed. Most of these tools, however, focus on taxonomic profiling and comparative analysis among groups, with very few analytical tools designed to correlate microbiota and the host phenotypic data. We have developed a software program for creating a web-based integrative database and analysis platform called MANTA (Microbiota And pheNoType correlation Analysis platform). In addition to storing the data, MANTA is equipped with an intuitive user interface that can be used to correlate the microbial composition with phenotypic parameters. Using a case study, we demonstrated that MANTA was able to quickly identify the significant correlations between microbial abundances and phenotypes that are supported by previous studies. Moreover, MANTA enabled the users to quick access locally stored data that can help interpret microbiota-phenotype relations. MANTA is available at https://mizuguchilab.org/manta/ for download and the source code can be found at https://github.com/chenyian-nibio/manta.
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spelling pubmed-77175362020-12-09 MANTA, an integrative database and analysis platform that relates microbiome and phenotypic data Chen, Yi-An Park, Jonguk Natsume-Kitatani, Yayoi Kawashima, Hitoshi Mohsen, Attayeb Hosomi, Koji Tanisawa, Kumpei Ohno, Harumi Konishi, Kana Murakami, Haruka Miyachi, Motohiko Kunisawa, Jun Mizuguchi, Kenji PLoS One Research Article With an ever-increasing interest in understanding the relationships between the microbiota and the host, more tools to map, analyze and interpret these relationships have been developed. Most of these tools, however, focus on taxonomic profiling and comparative analysis among groups, with very few analytical tools designed to correlate microbiota and the host phenotypic data. We have developed a software program for creating a web-based integrative database and analysis platform called MANTA (Microbiota And pheNoType correlation Analysis platform). In addition to storing the data, MANTA is equipped with an intuitive user interface that can be used to correlate the microbial composition with phenotypic parameters. Using a case study, we demonstrated that MANTA was able to quickly identify the significant correlations between microbial abundances and phenotypes that are supported by previous studies. Moreover, MANTA enabled the users to quick access locally stored data that can help interpret microbiota-phenotype relations. MANTA is available at https://mizuguchilab.org/manta/ for download and the source code can be found at https://github.com/chenyian-nibio/manta. Public Library of Science 2020-12-04 /pmc/articles/PMC7717536/ /pubmed/33275647 http://dx.doi.org/10.1371/journal.pone.0243609 Text en © 2020 Chen et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Chen, Yi-An
Park, Jonguk
Natsume-Kitatani, Yayoi
Kawashima, Hitoshi
Mohsen, Attayeb
Hosomi, Koji
Tanisawa, Kumpei
Ohno, Harumi
Konishi, Kana
Murakami, Haruka
Miyachi, Motohiko
Kunisawa, Jun
Mizuguchi, Kenji
MANTA, an integrative database and analysis platform that relates microbiome and phenotypic data
title MANTA, an integrative database and analysis platform that relates microbiome and phenotypic data
title_full MANTA, an integrative database and analysis platform that relates microbiome and phenotypic data
title_fullStr MANTA, an integrative database and analysis platform that relates microbiome and phenotypic data
title_full_unstemmed MANTA, an integrative database and analysis platform that relates microbiome and phenotypic data
title_short MANTA, an integrative database and analysis platform that relates microbiome and phenotypic data
title_sort manta, an integrative database and analysis platform that relates microbiome and phenotypic data
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7717536/
https://www.ncbi.nlm.nih.gov/pubmed/33275647
http://dx.doi.org/10.1371/journal.pone.0243609
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