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Clinical and Biological Significances of a Ferroptosis-Related Gene Signature in Glioma
Ferroptosis is a form of cell death characterized by non-apoptosis induced by small molecules in tumors. Studies have demonstrated that ferroptosis regulates the biological behaviors of tumors. Therefore, genes that control ferroptosis can be a promising candidate bioindicator in tumor therapy. Here...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7718027/ https://www.ncbi.nlm.nih.gov/pubmed/33330074 http://dx.doi.org/10.3389/fonc.2020.590861 |
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author | Zhuo, Shenghua Chen, Zhimin Yang, Yibei Zhang, Jinben Tang, Jianming Yang, Kun |
author_facet | Zhuo, Shenghua Chen, Zhimin Yang, Yibei Zhang, Jinben Tang, Jianming Yang, Kun |
author_sort | Zhuo, Shenghua |
collection | PubMed |
description | Ferroptosis is a form of cell death characterized by non-apoptosis induced by small molecules in tumors. Studies have demonstrated that ferroptosis regulates the biological behaviors of tumors. Therefore, genes that control ferroptosis can be a promising candidate bioindicator in tumor therapy. Herein, functions of ferroptosis-related genes in glioma were investigated. We systematically assessed the relationship between ferroptosis-related genes expression profiles and prognosis in glioma patients based on The Cancer Genome Atlas (TCGA) and Chinese Glioma Genome Atlas (CGGA) RNA sequencing datasets. Using the non-negative matrix factorization (NMF) clustering method, 84 ferroptosis-related genes in the RNA sequencing data were distinctly classified into two subgroups (named cluster 1 and cluster 2) in glioma. The least absolute shrinkage and selection operator (LASSO) was used to develop a 25 gene risk signature. The relationship between the gene risk signature and clinical features in glioma was characterized. Results show that the gene risk signature associated with clinical features can be as an independent prognostic indicator in glioma patients. Collectively, the ferroptosis-related risk signature presented in this study can potentially predict the outcome of glioma patients. |
format | Online Article Text |
id | pubmed-7718027 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-77180272020-12-15 Clinical and Biological Significances of a Ferroptosis-Related Gene Signature in Glioma Zhuo, Shenghua Chen, Zhimin Yang, Yibei Zhang, Jinben Tang, Jianming Yang, Kun Front Oncol Oncology Ferroptosis is a form of cell death characterized by non-apoptosis induced by small molecules in tumors. Studies have demonstrated that ferroptosis regulates the biological behaviors of tumors. Therefore, genes that control ferroptosis can be a promising candidate bioindicator in tumor therapy. Herein, functions of ferroptosis-related genes in glioma were investigated. We systematically assessed the relationship between ferroptosis-related genes expression profiles and prognosis in glioma patients based on The Cancer Genome Atlas (TCGA) and Chinese Glioma Genome Atlas (CGGA) RNA sequencing datasets. Using the non-negative matrix factorization (NMF) clustering method, 84 ferroptosis-related genes in the RNA sequencing data were distinctly classified into two subgroups (named cluster 1 and cluster 2) in glioma. The least absolute shrinkage and selection operator (LASSO) was used to develop a 25 gene risk signature. The relationship between the gene risk signature and clinical features in glioma was characterized. Results show that the gene risk signature associated with clinical features can be as an independent prognostic indicator in glioma patients. Collectively, the ferroptosis-related risk signature presented in this study can potentially predict the outcome of glioma patients. Frontiers Media S.A. 2020-11-20 /pmc/articles/PMC7718027/ /pubmed/33330074 http://dx.doi.org/10.3389/fonc.2020.590861 Text en Copyright © 2020 Zhuo, Chen, Yang, Zhang, Tang and Yang http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Oncology Zhuo, Shenghua Chen, Zhimin Yang, Yibei Zhang, Jinben Tang, Jianming Yang, Kun Clinical and Biological Significances of a Ferroptosis-Related Gene Signature in Glioma |
title | Clinical and Biological Significances of a Ferroptosis-Related Gene Signature in Glioma |
title_full | Clinical and Biological Significances of a Ferroptosis-Related Gene Signature in Glioma |
title_fullStr | Clinical and Biological Significances of a Ferroptosis-Related Gene Signature in Glioma |
title_full_unstemmed | Clinical and Biological Significances of a Ferroptosis-Related Gene Signature in Glioma |
title_short | Clinical and Biological Significances of a Ferroptosis-Related Gene Signature in Glioma |
title_sort | clinical and biological significances of a ferroptosis-related gene signature in glioma |
topic | Oncology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7718027/ https://www.ncbi.nlm.nih.gov/pubmed/33330074 http://dx.doi.org/10.3389/fonc.2020.590861 |
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