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Clinical and Biological Significances of a Ferroptosis-Related Gene Signature in Glioma

Ferroptosis is a form of cell death characterized by non-apoptosis induced by small molecules in tumors. Studies have demonstrated that ferroptosis regulates the biological behaviors of tumors. Therefore, genes that control ferroptosis can be a promising candidate bioindicator in tumor therapy. Here...

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Autores principales: Zhuo, Shenghua, Chen, Zhimin, Yang, Yibei, Zhang, Jinben, Tang, Jianming, Yang, Kun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7718027/
https://www.ncbi.nlm.nih.gov/pubmed/33330074
http://dx.doi.org/10.3389/fonc.2020.590861
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author Zhuo, Shenghua
Chen, Zhimin
Yang, Yibei
Zhang, Jinben
Tang, Jianming
Yang, Kun
author_facet Zhuo, Shenghua
Chen, Zhimin
Yang, Yibei
Zhang, Jinben
Tang, Jianming
Yang, Kun
author_sort Zhuo, Shenghua
collection PubMed
description Ferroptosis is a form of cell death characterized by non-apoptosis induced by small molecules in tumors. Studies have demonstrated that ferroptosis regulates the biological behaviors of tumors. Therefore, genes that control ferroptosis can be a promising candidate bioindicator in tumor therapy. Herein, functions of ferroptosis-related genes in glioma were investigated. We systematically assessed the relationship between ferroptosis-related genes expression profiles and prognosis in glioma patients based on The Cancer Genome Atlas (TCGA) and Chinese Glioma Genome Atlas (CGGA) RNA sequencing datasets. Using the non-negative matrix factorization (NMF) clustering method, 84 ferroptosis-related genes in the RNA sequencing data were distinctly classified into two subgroups (named cluster 1 and cluster 2) in glioma. The least absolute shrinkage and selection operator (LASSO) was used to develop a 25 gene risk signature. The relationship between the gene risk signature and clinical features in glioma was characterized. Results show that the gene risk signature associated with clinical features can be as an independent prognostic indicator in glioma patients. Collectively, the ferroptosis-related risk signature presented in this study can potentially predict the outcome of glioma patients.
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spelling pubmed-77180272020-12-15 Clinical and Biological Significances of a Ferroptosis-Related Gene Signature in Glioma Zhuo, Shenghua Chen, Zhimin Yang, Yibei Zhang, Jinben Tang, Jianming Yang, Kun Front Oncol Oncology Ferroptosis is a form of cell death characterized by non-apoptosis induced by small molecules in tumors. Studies have demonstrated that ferroptosis regulates the biological behaviors of tumors. Therefore, genes that control ferroptosis can be a promising candidate bioindicator in tumor therapy. Herein, functions of ferroptosis-related genes in glioma were investigated. We systematically assessed the relationship between ferroptosis-related genes expression profiles and prognosis in glioma patients based on The Cancer Genome Atlas (TCGA) and Chinese Glioma Genome Atlas (CGGA) RNA sequencing datasets. Using the non-negative matrix factorization (NMF) clustering method, 84 ferroptosis-related genes in the RNA sequencing data were distinctly classified into two subgroups (named cluster 1 and cluster 2) in glioma. The least absolute shrinkage and selection operator (LASSO) was used to develop a 25 gene risk signature. The relationship between the gene risk signature and clinical features in glioma was characterized. Results show that the gene risk signature associated with clinical features can be as an independent prognostic indicator in glioma patients. Collectively, the ferroptosis-related risk signature presented in this study can potentially predict the outcome of glioma patients. Frontiers Media S.A. 2020-11-20 /pmc/articles/PMC7718027/ /pubmed/33330074 http://dx.doi.org/10.3389/fonc.2020.590861 Text en Copyright © 2020 Zhuo, Chen, Yang, Zhang, Tang and Yang http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Oncology
Zhuo, Shenghua
Chen, Zhimin
Yang, Yibei
Zhang, Jinben
Tang, Jianming
Yang, Kun
Clinical and Biological Significances of a Ferroptosis-Related Gene Signature in Glioma
title Clinical and Biological Significances of a Ferroptosis-Related Gene Signature in Glioma
title_full Clinical and Biological Significances of a Ferroptosis-Related Gene Signature in Glioma
title_fullStr Clinical and Biological Significances of a Ferroptosis-Related Gene Signature in Glioma
title_full_unstemmed Clinical and Biological Significances of a Ferroptosis-Related Gene Signature in Glioma
title_short Clinical and Biological Significances of a Ferroptosis-Related Gene Signature in Glioma
title_sort clinical and biological significances of a ferroptosis-related gene signature in glioma
topic Oncology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7718027/
https://www.ncbi.nlm.nih.gov/pubmed/33330074
http://dx.doi.org/10.3389/fonc.2020.590861
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