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Variation in 100 relevant pharmacogenes among emiratis with insights from understudied populations

Genetic variations have an established impact on the pharmacological response. Investigating this variation resulted in a compilation of variants in “pharmacogenes”. The emergence of next-generation sequencing facilitated large-scale pharmacogenomic studies and exhibited the extensive variability of...

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Autores principales: Al-Mahayri, Zeina N., Patrinos, George P., Wattanapokayakit, Sukanya, Iemwimangsa, Nareenart, Fukunaga, Koya, Mushiroda, Taisei, Chantratita, Wasun, Ali, Bassam R.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7718919/
https://www.ncbi.nlm.nih.gov/pubmed/33277594
http://dx.doi.org/10.1038/s41598-020-78231-3
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author Al-Mahayri, Zeina N.
Patrinos, George P.
Wattanapokayakit, Sukanya
Iemwimangsa, Nareenart
Fukunaga, Koya
Mushiroda, Taisei
Chantratita, Wasun
Ali, Bassam R.
author_facet Al-Mahayri, Zeina N.
Patrinos, George P.
Wattanapokayakit, Sukanya
Iemwimangsa, Nareenart
Fukunaga, Koya
Mushiroda, Taisei
Chantratita, Wasun
Ali, Bassam R.
author_sort Al-Mahayri, Zeina N.
collection PubMed
description Genetic variations have an established impact on the pharmacological response. Investigating this variation resulted in a compilation of variants in “pharmacogenes”. The emergence of next-generation sequencing facilitated large-scale pharmacogenomic studies and exhibited the extensive variability of pharmacogenes. Some rare and population-specific variants proved to be actionable, suggesting the significance of population pharmacogenomic research. A profound gap exists in the knowledge of pharmacogenomic variants enriched in some populations, including the United Arab Emirates (UAE). The current study aims to explore the landscape of variations in relevant pharmacogenes among healthy Emiratis. Through the resequencing of 100 pharmacogenes for 100 healthy Emiratis, we identified 1243 variants, of which 63% are rare (minor allele frequency ≤ 0.01), and 30% were unique. Filtering the variants according to Pharmacogenomics Knowledge Base (PharmGKB) annotations identified 27 diplotypes and 26 variants with an evident clinical relevance. Comparison with global data illustrated a significant deviation of allele frequencies in the UAE population. Understudied populations display a distinct allelic architecture and various rare and unique variants. We underscored pharmacogenes with the highest variation frequencies and provided investigators with a list of candidate genes for future studies. Population pharmacogenomic studies are imperative during the pursuit of global pharmacogenomics implementation.
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spelling pubmed-77189192020-12-08 Variation in 100 relevant pharmacogenes among emiratis with insights from understudied populations Al-Mahayri, Zeina N. Patrinos, George P. Wattanapokayakit, Sukanya Iemwimangsa, Nareenart Fukunaga, Koya Mushiroda, Taisei Chantratita, Wasun Ali, Bassam R. Sci Rep Article Genetic variations have an established impact on the pharmacological response. Investigating this variation resulted in a compilation of variants in “pharmacogenes”. The emergence of next-generation sequencing facilitated large-scale pharmacogenomic studies and exhibited the extensive variability of pharmacogenes. Some rare and population-specific variants proved to be actionable, suggesting the significance of population pharmacogenomic research. A profound gap exists in the knowledge of pharmacogenomic variants enriched in some populations, including the United Arab Emirates (UAE). The current study aims to explore the landscape of variations in relevant pharmacogenes among healthy Emiratis. Through the resequencing of 100 pharmacogenes for 100 healthy Emiratis, we identified 1243 variants, of which 63% are rare (minor allele frequency ≤ 0.01), and 30% were unique. Filtering the variants according to Pharmacogenomics Knowledge Base (PharmGKB) annotations identified 27 diplotypes and 26 variants with an evident clinical relevance. Comparison with global data illustrated a significant deviation of allele frequencies in the UAE population. Understudied populations display a distinct allelic architecture and various rare and unique variants. We underscored pharmacogenes with the highest variation frequencies and provided investigators with a list of candidate genes for future studies. Population pharmacogenomic studies are imperative during the pursuit of global pharmacogenomics implementation. Nature Publishing Group UK 2020-12-04 /pmc/articles/PMC7718919/ /pubmed/33277594 http://dx.doi.org/10.1038/s41598-020-78231-3 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Al-Mahayri, Zeina N.
Patrinos, George P.
Wattanapokayakit, Sukanya
Iemwimangsa, Nareenart
Fukunaga, Koya
Mushiroda, Taisei
Chantratita, Wasun
Ali, Bassam R.
Variation in 100 relevant pharmacogenes among emiratis with insights from understudied populations
title Variation in 100 relevant pharmacogenes among emiratis with insights from understudied populations
title_full Variation in 100 relevant pharmacogenes among emiratis with insights from understudied populations
title_fullStr Variation in 100 relevant pharmacogenes among emiratis with insights from understudied populations
title_full_unstemmed Variation in 100 relevant pharmacogenes among emiratis with insights from understudied populations
title_short Variation in 100 relevant pharmacogenes among emiratis with insights from understudied populations
title_sort variation in 100 relevant pharmacogenes among emiratis with insights from understudied populations
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7718919/
https://www.ncbi.nlm.nih.gov/pubmed/33277594
http://dx.doi.org/10.1038/s41598-020-78231-3
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