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The mitochondrial genome analysis of Paragnetina indentata (Plecoptera: Perlidae)
In this study, the entire mitochondrial genome of Paragnetina indentata was sequenced. The circular mitochondrial genome was the first mitochondrial genome representing the genus Paragnetina, which consists of 13 protein-coding genes (PCGs), 2 ribosomal RNA genes, 22 transfer RNA genes, and 1 contro...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7720948/ https://www.ncbi.nlm.nih.gov/pubmed/33366414 http://dx.doi.org/10.1080/23802359.2019.1693927 |
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author | Wei, Xiping Cao, Jinjun Wang, Pengcheng Wang, Ying Li, Weihai |
author_facet | Wei, Xiping Cao, Jinjun Wang, Pengcheng Wang, Ying Li, Weihai |
author_sort | Wei, Xiping |
collection | PubMed |
description | In this study, the entire mitochondrial genome of Paragnetina indentata was sequenced. The circular mitochondrial genome was the first mitochondrial genome representing the genus Paragnetina, which consists of 13 protein-coding genes (PCGs), 2 ribosomal RNA genes, 22 transfer RNA genes, and 1 control region with the length of 15,885 bp. In the complete sequence, the A + T content for 64.1% (A for 33.6%, T for 30.5%, C for 23.3%, and G for 12.7%). Among the 13 PCGs, 11 start codons is ATN and the start codon of ND1, ND2, and ND5 genes is TTG, GTG, and GTG, respectively. In addition, 11 of the PCGs used conservative termination codon TAA or TAG, except for COII and ND5 which terminated by the single T. By using the Bayesian inference (BI) and maximum-likelihood (ML) methods, the phylogenetic relationship showed that P. indentata was closely related to Togoperla sp. and the species of Perlinae were clustered in a clade. |
format | Online Article Text |
id | pubmed-7720948 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77209482020-12-22 The mitochondrial genome analysis of Paragnetina indentata (Plecoptera: Perlidae) Wei, Xiping Cao, Jinjun Wang, Pengcheng Wang, Ying Li, Weihai Mitochondrial DNA B Resour Mitogenome Announcement In this study, the entire mitochondrial genome of Paragnetina indentata was sequenced. The circular mitochondrial genome was the first mitochondrial genome representing the genus Paragnetina, which consists of 13 protein-coding genes (PCGs), 2 ribosomal RNA genes, 22 transfer RNA genes, and 1 control region with the length of 15,885 bp. In the complete sequence, the A + T content for 64.1% (A for 33.6%, T for 30.5%, C for 23.3%, and G for 12.7%). Among the 13 PCGs, 11 start codons is ATN and the start codon of ND1, ND2, and ND5 genes is TTG, GTG, and GTG, respectively. In addition, 11 of the PCGs used conservative termination codon TAA or TAG, except for COII and ND5 which terminated by the single T. By using the Bayesian inference (BI) and maximum-likelihood (ML) methods, the phylogenetic relationship showed that P. indentata was closely related to Togoperla sp. and the species of Perlinae were clustered in a clade. Taylor & Francis 2019-12-09 /pmc/articles/PMC7720948/ /pubmed/33366414 http://dx.doi.org/10.1080/23802359.2019.1693927 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) ), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Wei, Xiping Cao, Jinjun Wang, Pengcheng Wang, Ying Li, Weihai The mitochondrial genome analysis of Paragnetina indentata (Plecoptera: Perlidae) |
title | The mitochondrial genome analysis of Paragnetina indentata (Plecoptera: Perlidae) |
title_full | The mitochondrial genome analysis of Paragnetina indentata (Plecoptera: Perlidae) |
title_fullStr | The mitochondrial genome analysis of Paragnetina indentata (Plecoptera: Perlidae) |
title_full_unstemmed | The mitochondrial genome analysis of Paragnetina indentata (Plecoptera: Perlidae) |
title_short | The mitochondrial genome analysis of Paragnetina indentata (Plecoptera: Perlidae) |
title_sort | mitochondrial genome analysis of paragnetina indentata (plecoptera: perlidae) |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7720948/ https://www.ncbi.nlm.nih.gov/pubmed/33366414 http://dx.doi.org/10.1080/23802359.2019.1693927 |
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