Characterization and phylogenetic analysis of the complete chloroplast genome of Cercis canadensis ‘Forest Pansy’

Cercis canadensis ‘Forest Pansy’ is a tree species with high ornamental value, which complete chloroplast (cp) genome was sequenced, assembled, and annotated. The genome size is 158,960 bp with a total GC content of 36.17%. The cp genome is made up of a large single-copy region (88,114 bp), a small...

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Autores principales: Feng, Lijuan, Tao, Jihan, Yang, Xuemei, Jiao, Qiqing, Wang, Chuanzeng, Cheng, Yun, Yin, Yanlei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7720959/
https://www.ncbi.nlm.nih.gov/pubmed/33366464
http://dx.doi.org/10.1080/23802359.2019.1698359
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author Feng, Lijuan
Tao, Jihan
Yang, Xuemei
Jiao, Qiqing
Wang, Chuanzeng
Cheng, Yun
Yin, Yanlei
author_facet Feng, Lijuan
Tao, Jihan
Yang, Xuemei
Jiao, Qiqing
Wang, Chuanzeng
Cheng, Yun
Yin, Yanlei
author_sort Feng, Lijuan
collection PubMed
description Cercis canadensis ‘Forest Pansy’ is a tree species with high ornamental value, which complete chloroplast (cp) genome was sequenced, assembled, and annotated. The genome size is 158,960 bp with a total GC content of 36.17%. The cp genome is made up of a large single-copy region (88,114 bp), a small single-copy region (19,590 bp), and two inverted repeat regions (25,628 bp each). It contains 128 genes, including 84 protein-coding genes, 36 tRNA genes, and 8 rRNA genes. Eighteen genes were duplicated in IRs. The maximum-likelihood (ML) phylogenetic analysis indicated that the Leguminosae species are grouped together, and C. canadensis ‘Forest Pansy’ is closely related to C. canadensis. The result would provide valuable information for genetic studies on Cercis genus.
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spelling pubmed-77209592020-12-22 Characterization and phylogenetic analysis of the complete chloroplast genome of Cercis canadensis ‘Forest Pansy’ Feng, Lijuan Tao, Jihan Yang, Xuemei Jiao, Qiqing Wang, Chuanzeng Cheng, Yun Yin, Yanlei Mitochondrial DNA B Resour Mitogenome Announcement Cercis canadensis ‘Forest Pansy’ is a tree species with high ornamental value, which complete chloroplast (cp) genome was sequenced, assembled, and annotated. The genome size is 158,960 bp with a total GC content of 36.17%. The cp genome is made up of a large single-copy region (88,114 bp), a small single-copy region (19,590 bp), and two inverted repeat regions (25,628 bp each). It contains 128 genes, including 84 protein-coding genes, 36 tRNA genes, and 8 rRNA genes. Eighteen genes were duplicated in IRs. The maximum-likelihood (ML) phylogenetic analysis indicated that the Leguminosae species are grouped together, and C. canadensis ‘Forest Pansy’ is closely related to C. canadensis. The result would provide valuable information for genetic studies on Cercis genus. Taylor & Francis 2019-12-13 /pmc/articles/PMC7720959/ /pubmed/33366464 http://dx.doi.org/10.1080/23802359.2019.1698359 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Feng, Lijuan
Tao, Jihan
Yang, Xuemei
Jiao, Qiqing
Wang, Chuanzeng
Cheng, Yun
Yin, Yanlei
Characterization and phylogenetic analysis of the complete chloroplast genome of Cercis canadensis ‘Forest Pansy’
title Characterization and phylogenetic analysis of the complete chloroplast genome of Cercis canadensis ‘Forest Pansy’
title_full Characterization and phylogenetic analysis of the complete chloroplast genome of Cercis canadensis ‘Forest Pansy’
title_fullStr Characterization and phylogenetic analysis of the complete chloroplast genome of Cercis canadensis ‘Forest Pansy’
title_full_unstemmed Characterization and phylogenetic analysis of the complete chloroplast genome of Cercis canadensis ‘Forest Pansy’
title_short Characterization and phylogenetic analysis of the complete chloroplast genome of Cercis canadensis ‘Forest Pansy’
title_sort characterization and phylogenetic analysis of the complete chloroplast genome of cercis canadensis ‘forest pansy’
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7720959/
https://www.ncbi.nlm.nih.gov/pubmed/33366464
http://dx.doi.org/10.1080/23802359.2019.1698359
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