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Characterization of the complete chloroplast genome of a medicinal plant, Wikstroemia indica (Thymelaeaceae)
The complete chloroplast genome of Wikstroemia indica, a medicinal plant with a variety of medicinal functions in treatment for arthritis, whooping cough, cancer, and bacillosis, was generated by de novo assembly using whole genome next-generation sequencing. The plastome was a quadripartite circula...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7720964/ https://www.ncbi.nlm.nih.gov/pubmed/33366433 http://dx.doi.org/10.1080/23802359.2019.1696249 |
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author | Qian, Shao-Juan Zhang, Yong-Hong |
author_facet | Qian, Shao-Juan Zhang, Yong-Hong |
author_sort | Qian, Shao-Juan |
collection | PubMed |
description | The complete chloroplast genome of Wikstroemia indica, a medicinal plant with a variety of medicinal functions in treatment for arthritis, whooping cough, cancer, and bacillosis, was generated by de novo assembly using whole genome next-generation sequencing. The plastome was a quadripartite circular with 151,731 bp in length; containing a large single-copy (LSC) region of 86,523 bp and a small single-copy (SSC) region of 12,384 bp; separated by 2 inverted repeat (IR) regions of 26,403 bp each. The chloroplast genome contained 124 genes, including 79 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. The GC content in the whole cp genome, LSC region, SSC region, and IR region were 37.4, 34.9, 32.4, and 42.6%, respectively. The phylogenetic tree indicated that W. indica has a close relationship with Stellera chamaejasme with 100% support. |
format | Online Article Text |
id | pubmed-7720964 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77209642020-12-22 Characterization of the complete chloroplast genome of a medicinal plant, Wikstroemia indica (Thymelaeaceae) Qian, Shao-Juan Zhang, Yong-Hong Mitochondrial DNA B Resour Mitogenome Announcement The complete chloroplast genome of Wikstroemia indica, a medicinal plant with a variety of medicinal functions in treatment for arthritis, whooping cough, cancer, and bacillosis, was generated by de novo assembly using whole genome next-generation sequencing. The plastome was a quadripartite circular with 151,731 bp in length; containing a large single-copy (LSC) region of 86,523 bp and a small single-copy (SSC) region of 12,384 bp; separated by 2 inverted repeat (IR) regions of 26,403 bp each. The chloroplast genome contained 124 genes, including 79 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. The GC content in the whole cp genome, LSC region, SSC region, and IR region were 37.4, 34.9, 32.4, and 42.6%, respectively. The phylogenetic tree indicated that W. indica has a close relationship with Stellera chamaejasme with 100% support. Taylor & Francis 2019-12-12 /pmc/articles/PMC7720964/ /pubmed/33366433 http://dx.doi.org/10.1080/23802359.2019.1696249 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Qian, Shao-Juan Zhang, Yong-Hong Characterization of the complete chloroplast genome of a medicinal plant, Wikstroemia indica (Thymelaeaceae) |
title | Characterization of the complete chloroplast genome of a medicinal plant, Wikstroemia indica (Thymelaeaceae) |
title_full | Characterization of the complete chloroplast genome of a medicinal plant, Wikstroemia indica (Thymelaeaceae) |
title_fullStr | Characterization of the complete chloroplast genome of a medicinal plant, Wikstroemia indica (Thymelaeaceae) |
title_full_unstemmed | Characterization of the complete chloroplast genome of a medicinal plant, Wikstroemia indica (Thymelaeaceae) |
title_short | Characterization of the complete chloroplast genome of a medicinal plant, Wikstroemia indica (Thymelaeaceae) |
title_sort | characterization of the complete chloroplast genome of a medicinal plant, wikstroemia indica (thymelaeaceae) |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7720964/ https://www.ncbi.nlm.nih.gov/pubmed/33366433 http://dx.doi.org/10.1080/23802359.2019.1696249 |
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