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Characterization of the complete chloroplast genome of a medicinal plant, Wikstroemia indica (Thymelaeaceae)

The complete chloroplast genome of Wikstroemia indica, a medicinal plant with a variety of medicinal functions in treatment for arthritis, whooping cough, cancer, and bacillosis, was generated by de novo assembly using whole genome next-generation sequencing. The plastome was a quadripartite circula...

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Detalles Bibliográficos
Autores principales: Qian, Shao-Juan, Zhang, Yong-Hong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7720964/
https://www.ncbi.nlm.nih.gov/pubmed/33366433
http://dx.doi.org/10.1080/23802359.2019.1696249
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author Qian, Shao-Juan
Zhang, Yong-Hong
author_facet Qian, Shao-Juan
Zhang, Yong-Hong
author_sort Qian, Shao-Juan
collection PubMed
description The complete chloroplast genome of Wikstroemia indica, a medicinal plant with a variety of medicinal functions in treatment for arthritis, whooping cough, cancer, and bacillosis, was generated by de novo assembly using whole genome next-generation sequencing. The plastome was a quadripartite circular with 151,731 bp in length; containing a large single-copy (LSC) region of 86,523 bp and a small single-copy (SSC) region of 12,384 bp; separated by 2 inverted repeat (IR) regions of 26,403 bp each. The chloroplast genome contained 124 genes, including 79 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. The GC content in the whole cp genome, LSC region, SSC region, and IR region were 37.4, 34.9, 32.4, and 42.6%, respectively. The phylogenetic tree indicated that W. indica has a close relationship with Stellera chamaejasme with 100% support.
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spelling pubmed-77209642020-12-22 Characterization of the complete chloroplast genome of a medicinal plant, Wikstroemia indica (Thymelaeaceae) Qian, Shao-Juan Zhang, Yong-Hong Mitochondrial DNA B Resour Mitogenome Announcement The complete chloroplast genome of Wikstroemia indica, a medicinal plant with a variety of medicinal functions in treatment for arthritis, whooping cough, cancer, and bacillosis, was generated by de novo assembly using whole genome next-generation sequencing. The plastome was a quadripartite circular with 151,731 bp in length; containing a large single-copy (LSC) region of 86,523 bp and a small single-copy (SSC) region of 12,384 bp; separated by 2 inverted repeat (IR) regions of 26,403 bp each. The chloroplast genome contained 124 genes, including 79 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. The GC content in the whole cp genome, LSC region, SSC region, and IR region were 37.4, 34.9, 32.4, and 42.6%, respectively. The phylogenetic tree indicated that W. indica has a close relationship with Stellera chamaejasme with 100% support. Taylor & Francis 2019-12-12 /pmc/articles/PMC7720964/ /pubmed/33366433 http://dx.doi.org/10.1080/23802359.2019.1696249 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Qian, Shao-Juan
Zhang, Yong-Hong
Characterization of the complete chloroplast genome of a medicinal plant, Wikstroemia indica (Thymelaeaceae)
title Characterization of the complete chloroplast genome of a medicinal plant, Wikstroemia indica (Thymelaeaceae)
title_full Characterization of the complete chloroplast genome of a medicinal plant, Wikstroemia indica (Thymelaeaceae)
title_fullStr Characterization of the complete chloroplast genome of a medicinal plant, Wikstroemia indica (Thymelaeaceae)
title_full_unstemmed Characterization of the complete chloroplast genome of a medicinal plant, Wikstroemia indica (Thymelaeaceae)
title_short Characterization of the complete chloroplast genome of a medicinal plant, Wikstroemia indica (Thymelaeaceae)
title_sort characterization of the complete chloroplast genome of a medicinal plant, wikstroemia indica (thymelaeaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7720964/
https://www.ncbi.nlm.nih.gov/pubmed/33366433
http://dx.doi.org/10.1080/23802359.2019.1696249
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