Complete chloroplast genome sequence of Pueraria lobata (Willd.) Ohwi (Fabaceae): a traditional Chinese medicinal herb

Pueraria lobata is a traditional Chinese herb which has been used medically since ancient times. In this study, we sequenced the complete chloroplast genome of P. lobata based on next-generation sequencing and used the data to assess genomic resources. The chloroplast genome of P. lobata is 153,411 ...

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Autores principales: Sun, Jiahui, Wang, Ling, Yuan, Yuan, Zhou, Rongrong, Duan, Haiyan, Zhao, Yuping
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7720969/
https://www.ncbi.nlm.nih.gov/pubmed/33366405
http://dx.doi.org/10.1080/23802359.2019.1694850
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author Sun, Jiahui
Wang, Ling
Yuan, Yuan
Zhou, Rongrong
Duan, Haiyan
Zhao, Yuping
author_facet Sun, Jiahui
Wang, Ling
Yuan, Yuan
Zhou, Rongrong
Duan, Haiyan
Zhao, Yuping
author_sort Sun, Jiahui
collection PubMed
description Pueraria lobata is a traditional Chinese herb which has been used medically since ancient times. In this study, we sequenced the complete chloroplast genome of P. lobata based on next-generation sequencing and used the data to assess genomic resources. The chloroplast genome of P. lobata is 153,411 bp in length consisting of large and small single-copy regions of length 84,142 and 17,989 bp, separated by two IR regions of 25,640 bp. The overall GC content was 35.4%. De novo assembly and annotation showed the presence of 112 unique genes with 78 protein-coding genes, 30 tRNA genes, and four rRNA genes. A maximum-likelihood phylogenomic analysis showed that Pueraria was sister to Pediomelum + Glycine.
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spelling pubmed-77209692020-12-22 Complete chloroplast genome sequence of Pueraria lobata (Willd.) Ohwi (Fabaceae): a traditional Chinese medicinal herb Sun, Jiahui Wang, Ling Yuan, Yuan Zhou, Rongrong Duan, Haiyan Zhao, Yuping Mitochondrial DNA B Resour Mitogenome Announcement Pueraria lobata is a traditional Chinese herb which has been used medically since ancient times. In this study, we sequenced the complete chloroplast genome of P. lobata based on next-generation sequencing and used the data to assess genomic resources. The chloroplast genome of P. lobata is 153,411 bp in length consisting of large and small single-copy regions of length 84,142 and 17,989 bp, separated by two IR regions of 25,640 bp. The overall GC content was 35.4%. De novo assembly and annotation showed the presence of 112 unique genes with 78 protein-coding genes, 30 tRNA genes, and four rRNA genes. A maximum-likelihood phylogenomic analysis showed that Pueraria was sister to Pediomelum + Glycine. Taylor & Francis 2019-12-09 /pmc/articles/PMC7720969/ /pubmed/33366405 http://dx.doi.org/10.1080/23802359.2019.1694850 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Sun, Jiahui
Wang, Ling
Yuan, Yuan
Zhou, Rongrong
Duan, Haiyan
Zhao, Yuping
Complete chloroplast genome sequence of Pueraria lobata (Willd.) Ohwi (Fabaceae): a traditional Chinese medicinal herb
title Complete chloroplast genome sequence of Pueraria lobata (Willd.) Ohwi (Fabaceae): a traditional Chinese medicinal herb
title_full Complete chloroplast genome sequence of Pueraria lobata (Willd.) Ohwi (Fabaceae): a traditional Chinese medicinal herb
title_fullStr Complete chloroplast genome sequence of Pueraria lobata (Willd.) Ohwi (Fabaceae): a traditional Chinese medicinal herb
title_full_unstemmed Complete chloroplast genome sequence of Pueraria lobata (Willd.) Ohwi (Fabaceae): a traditional Chinese medicinal herb
title_short Complete chloroplast genome sequence of Pueraria lobata (Willd.) Ohwi (Fabaceae): a traditional Chinese medicinal herb
title_sort complete chloroplast genome sequence of pueraria lobata (willd.) ohwi (fabaceae): a traditional chinese medicinal herb
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7720969/
https://www.ncbi.nlm.nih.gov/pubmed/33366405
http://dx.doi.org/10.1080/23802359.2019.1694850
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