Single-molecule sequencing yields the complete chloroplast genome sequence of Populus deltoides

Populus deltoides is a fast-growing, large tree and one of the largest North American hardwood trees. In this study, the complete chloroplast (cp) genome sequence of P. deltoides is characterized. The whole cp genome was assembled to 156,867 bp, including a large single copy (LSC) region of 85,534 b...

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Autores principales: Wu, Dongyang, Wang, Yupeng, Wu, Donghua, Dou, Lijun, Gao, Linming
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7720975/
https://www.ncbi.nlm.nih.gov/pubmed/33366451
http://dx.doi.org/10.1080/23802359.2019.1698346
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author Wu, Dongyang
Wang, Yupeng
Wu, Donghua
Dou, Lijun
Gao, Linming
author_facet Wu, Dongyang
Wang, Yupeng
Wu, Donghua
Dou, Lijun
Gao, Linming
author_sort Wu, Dongyang
collection PubMed
description Populus deltoides is a fast-growing, large tree and one of the largest North American hardwood trees. In this study, the complete chloroplast (cp) genome sequence of P. deltoides is characterized. The whole cp genome was assembled to 156,867 bp, including a large single copy (LSC) region of 85,534 bp, a small single copy (SSC) region of 16,513 bp and a pair of inverted repeats (IRs) region of 27,410 bp. The base content of the P. deltoides cp genome is A (32.0%), T (31.3%), C (18.0%), and G (18.7%), and AT bases occupy a large proportion of the cp genome. The neighbor-joining phylogenetic analysis with 20 cp genomes from the Salicaceae family showed that P. deltoides is sister to Populus davidiana. These will provide for the evolutionary and biological studies in Salicaceae family.
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spelling pubmed-77209752020-12-22 Single-molecule sequencing yields the complete chloroplast genome sequence of Populus deltoides Wu, Dongyang Wang, Yupeng Wu, Donghua Dou, Lijun Gao, Linming Mitochondrial DNA B Resour Mitogenome Announcement Populus deltoides is a fast-growing, large tree and one of the largest North American hardwood trees. In this study, the complete chloroplast (cp) genome sequence of P. deltoides is characterized. The whole cp genome was assembled to 156,867 bp, including a large single copy (LSC) region of 85,534 bp, a small single copy (SSC) region of 16,513 bp and a pair of inverted repeats (IRs) region of 27,410 bp. The base content of the P. deltoides cp genome is A (32.0%), T (31.3%), C (18.0%), and G (18.7%), and AT bases occupy a large proportion of the cp genome. The neighbor-joining phylogenetic analysis with 20 cp genomes from the Salicaceae family showed that P. deltoides is sister to Populus davidiana. These will provide for the evolutionary and biological studies in Salicaceae family. Taylor & Francis 2019-12-12 /pmc/articles/PMC7720975/ /pubmed/33366451 http://dx.doi.org/10.1080/23802359.2019.1698346 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Wu, Dongyang
Wang, Yupeng
Wu, Donghua
Dou, Lijun
Gao, Linming
Single-molecule sequencing yields the complete chloroplast genome sequence of Populus deltoides
title Single-molecule sequencing yields the complete chloroplast genome sequence of Populus deltoides
title_full Single-molecule sequencing yields the complete chloroplast genome sequence of Populus deltoides
title_fullStr Single-molecule sequencing yields the complete chloroplast genome sequence of Populus deltoides
title_full_unstemmed Single-molecule sequencing yields the complete chloroplast genome sequence of Populus deltoides
title_short Single-molecule sequencing yields the complete chloroplast genome sequence of Populus deltoides
title_sort single-molecule sequencing yields the complete chloroplast genome sequence of populus deltoides
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7720975/
https://www.ncbi.nlm.nih.gov/pubmed/33366451
http://dx.doi.org/10.1080/23802359.2019.1698346
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