The complete plastid genome of Jeffersonia diphylla and its phylogenetic position inference

Jeffersonia diphylla, which belongs to Berberidaceae, is a perennial herb native to North America. In the present study, we determined the first plastome of J. diphylla using genome skimming approach. The pastome of J. diphylla is 152,842 bp in length, with a large single copy region (LSC) of 82,266...

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Detalles Bibliográficos
Autores principales: Li, Rui, Dong, Meifang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7720998/
https://www.ncbi.nlm.nih.gov/pubmed/33366430
http://dx.doi.org/10.1080/23802359.2019.1696250
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author Li, Rui
Dong, Meifang
author_facet Li, Rui
Dong, Meifang
author_sort Li, Rui
collection PubMed
description Jeffersonia diphylla, which belongs to Berberidaceae, is a perennial herb native to North America. In the present study, we determined the first plastome of J. diphylla using genome skimming approach. The pastome of J. diphylla is 152,842 bp in length, with a large single copy region (LSC) of 82,266 bp and a small single copy region (SSC) of 19,284 bp separated by a pair of inverted repeats (IRs) of 25,646 bp. It encodes 113 unique genes, consisting of 79 protein-coding genes, 30 tRNA genes, and four rRNA genes, with 19 duplicated genes in the IR regions. Phylogenetic analysis indicates that J. diphylla is sister to Plagiorhegma dubium, subsequently is sister to a clade including Diphylleia, Sinopodophyllum, Podophyllum, Dysosma, Achlys, and Epimedium.
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spelling pubmed-77209982020-12-22 The complete plastid genome of Jeffersonia diphylla and its phylogenetic position inference Li, Rui Dong, Meifang Mitochondrial DNA B Resour Mitogenome Announcement Jeffersonia diphylla, which belongs to Berberidaceae, is a perennial herb native to North America. In the present study, we determined the first plastome of J. diphylla using genome skimming approach. The pastome of J. diphylla is 152,842 bp in length, with a large single copy region (LSC) of 82,266 bp and a small single copy region (SSC) of 19,284 bp separated by a pair of inverted repeats (IRs) of 25,646 bp. It encodes 113 unique genes, consisting of 79 protein-coding genes, 30 tRNA genes, and four rRNA genes, with 19 duplicated genes in the IR regions. Phylogenetic analysis indicates that J. diphylla is sister to Plagiorhegma dubium, subsequently is sister to a clade including Diphylleia, Sinopodophyllum, Podophyllum, Dysosma, Achlys, and Epimedium. Taylor & Francis 2019-12-09 /pmc/articles/PMC7720998/ /pubmed/33366430 http://dx.doi.org/10.1080/23802359.2019.1696250 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Li, Rui
Dong, Meifang
The complete plastid genome of Jeffersonia diphylla and its phylogenetic position inference
title The complete plastid genome of Jeffersonia diphylla and its phylogenetic position inference
title_full The complete plastid genome of Jeffersonia diphylla and its phylogenetic position inference
title_fullStr The complete plastid genome of Jeffersonia diphylla and its phylogenetic position inference
title_full_unstemmed The complete plastid genome of Jeffersonia diphylla and its phylogenetic position inference
title_short The complete plastid genome of Jeffersonia diphylla and its phylogenetic position inference
title_sort complete plastid genome of jeffersonia diphylla and its phylogenetic position inference
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7720998/
https://www.ncbi.nlm.nih.gov/pubmed/33366430
http://dx.doi.org/10.1080/23802359.2019.1696250
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