The complete chloroplast genome of Rhododendron delavayi (Ericaceae)

Rhododendron delavayi, as a member of Ericaceae family, has been widely used as an important garden flower. The cp genome of R. delavayi exhibited a typical quadripartite cycle with 193,798 bp, comprising of a pair of inverted repeats (IRa and IRb) of 15,494 bp intersected by a large single copy (LS...

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Autores principales: Liu, Jie, Chen, Ting, Zhang, Yubin, Li, Yuke, Gong, Jiyi, Yi, Yin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7721020/
https://www.ncbi.nlm.nih.gov/pubmed/33366411
http://dx.doi.org/10.1080/23802359.2019.1689860
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author Liu, Jie
Chen, Ting
Zhang, Yubin
Li, Yuke
Gong, Jiyi
Yi, Yin
author_facet Liu, Jie
Chen, Ting
Zhang, Yubin
Li, Yuke
Gong, Jiyi
Yi, Yin
author_sort Liu, Jie
collection PubMed
description Rhododendron delavayi, as a member of Ericaceae family, has been widely used as an important garden flower. The cp genome of R. delavayi exhibited a typical quadripartite cycle with 193,798 bp, comprising of a pair of inverted repeats (IRa and IRb) of 15,494 bp intersected by a large single copy (LSC) region of 160,234 bp and a quite small single copy region of 2576 bp. Totally, 123 unique genes were assembled in this cp genome, including 80 protein genes, 35 tRNAs and 8 rRNAs. Out of these assembled genes, 88 genes (71.54%) were single copy. Phylogenetic analysis based on 14 cp genome of related species showed that the R. delavayi was closely related to Vaccinium oldhamii. This study provides important information for future evolution, genetic and molecular biology studies of Rhododendron.
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spelling pubmed-77210202020-12-22 The complete chloroplast genome of Rhododendron delavayi (Ericaceae) Liu, Jie Chen, Ting Zhang, Yubin Li, Yuke Gong, Jiyi Yi, Yin Mitochondrial DNA B Resour Mitogenome Announcement Rhododendron delavayi, as a member of Ericaceae family, has been widely used as an important garden flower. The cp genome of R. delavayi exhibited a typical quadripartite cycle with 193,798 bp, comprising of a pair of inverted repeats (IRa and IRb) of 15,494 bp intersected by a large single copy (LSC) region of 160,234 bp and a quite small single copy region of 2576 bp. Totally, 123 unique genes were assembled in this cp genome, including 80 protein genes, 35 tRNAs and 8 rRNAs. Out of these assembled genes, 88 genes (71.54%) were single copy. Phylogenetic analysis based on 14 cp genome of related species showed that the R. delavayi was closely related to Vaccinium oldhamii. This study provides important information for future evolution, genetic and molecular biology studies of Rhododendron. Taylor & Francis 2019-12-09 /pmc/articles/PMC7721020/ /pubmed/33366411 http://dx.doi.org/10.1080/23802359.2019.1689860 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Liu, Jie
Chen, Ting
Zhang, Yubin
Li, Yuke
Gong, Jiyi
Yi, Yin
The complete chloroplast genome of Rhododendron delavayi (Ericaceae)
title The complete chloroplast genome of Rhododendron delavayi (Ericaceae)
title_full The complete chloroplast genome of Rhododendron delavayi (Ericaceae)
title_fullStr The complete chloroplast genome of Rhododendron delavayi (Ericaceae)
title_full_unstemmed The complete chloroplast genome of Rhododendron delavayi (Ericaceae)
title_short The complete chloroplast genome of Rhododendron delavayi (Ericaceae)
title_sort complete chloroplast genome of rhododendron delavayi (ericaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7721020/
https://www.ncbi.nlm.nih.gov/pubmed/33366411
http://dx.doi.org/10.1080/23802359.2019.1689860
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