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Breaking the circularity in circular analyses: Simulations and formal treatment of the flattened average approach

There has been considerable debate and concern as to whether there is a replication crisis in the scientific literature. A likely cause of poor replication is the multiple comparisons problem. An important way in which this problem can manifest in the M/EEG context is through post hoc tailoring of a...

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Autores principales: Bowman, Howard, Brooks, Joseph L., Hajilou, Omid, Zoumpoulaki, Alexia, Litvak, Vladimir
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7721178/
https://www.ncbi.nlm.nih.gov/pubmed/33226982
http://dx.doi.org/10.1371/journal.pcbi.1008286
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author Bowman, Howard
Brooks, Joseph L.
Hajilou, Omid
Zoumpoulaki, Alexia
Litvak, Vladimir
author_facet Bowman, Howard
Brooks, Joseph L.
Hajilou, Omid
Zoumpoulaki, Alexia
Litvak, Vladimir
author_sort Bowman, Howard
collection PubMed
description There has been considerable debate and concern as to whether there is a replication crisis in the scientific literature. A likely cause of poor replication is the multiple comparisons problem. An important way in which this problem can manifest in the M/EEG context is through post hoc tailoring of analysis windows (a.k.a. regions-of-interest, ROIs) to landmarks in the collected data. Post hoc tailoring of ROIs is used because it allows researchers to adapt to inter-experiment variability and discover novel differences that fall outside of windows defined by prior precedent, thereby reducing Type II errors. However, this approach can dramatically inflate Type I error rates. One way to avoid this problem is to tailor windows according to a contrast that is orthogonal (strictly parametrically orthogonal) to the contrast being tested. A key approach of this kind is to identify windows on a fully flattened average. On the basis of simulations, this approach has been argued to be safe for post hoc tailoring of analysis windows under many conditions. Here, we present further simulations and mathematical proofs to show exactly why the Fully Flattened Average approach is unbiased, providing a formal grounding to the approach, clarifying the limits of its applicability and resolving published misconceptions about the method. We also provide a statistical power analysis, which shows that, in specific contexts, the fully flattened average approach provides higher statistical power than Fieldtrip cluster inference. This suggests that the Fully Flattened Average approach will enable researchers to identify more effects from their data without incurring an inflation of the false positive rate.
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spelling pubmed-77211782020-12-15 Breaking the circularity in circular analyses: Simulations and formal treatment of the flattened average approach Bowman, Howard Brooks, Joseph L. Hajilou, Omid Zoumpoulaki, Alexia Litvak, Vladimir PLoS Comput Biol Research Article There has been considerable debate and concern as to whether there is a replication crisis in the scientific literature. A likely cause of poor replication is the multiple comparisons problem. An important way in which this problem can manifest in the M/EEG context is through post hoc tailoring of analysis windows (a.k.a. regions-of-interest, ROIs) to landmarks in the collected data. Post hoc tailoring of ROIs is used because it allows researchers to adapt to inter-experiment variability and discover novel differences that fall outside of windows defined by prior precedent, thereby reducing Type II errors. However, this approach can dramatically inflate Type I error rates. One way to avoid this problem is to tailor windows according to a contrast that is orthogonal (strictly parametrically orthogonal) to the contrast being tested. A key approach of this kind is to identify windows on a fully flattened average. On the basis of simulations, this approach has been argued to be safe for post hoc tailoring of analysis windows under many conditions. Here, we present further simulations and mathematical proofs to show exactly why the Fully Flattened Average approach is unbiased, providing a formal grounding to the approach, clarifying the limits of its applicability and resolving published misconceptions about the method. We also provide a statistical power analysis, which shows that, in specific contexts, the fully flattened average approach provides higher statistical power than Fieldtrip cluster inference. This suggests that the Fully Flattened Average approach will enable researchers to identify more effects from their data without incurring an inflation of the false positive rate. Public Library of Science 2020-11-23 /pmc/articles/PMC7721178/ /pubmed/33226982 http://dx.doi.org/10.1371/journal.pcbi.1008286 Text en © 2020 Bowman et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Bowman, Howard
Brooks, Joseph L.
Hajilou, Omid
Zoumpoulaki, Alexia
Litvak, Vladimir
Breaking the circularity in circular analyses: Simulations and formal treatment of the flattened average approach
title Breaking the circularity in circular analyses: Simulations and formal treatment of the flattened average approach
title_full Breaking the circularity in circular analyses: Simulations and formal treatment of the flattened average approach
title_fullStr Breaking the circularity in circular analyses: Simulations and formal treatment of the flattened average approach
title_full_unstemmed Breaking the circularity in circular analyses: Simulations and formal treatment of the flattened average approach
title_short Breaking the circularity in circular analyses: Simulations and formal treatment of the flattened average approach
title_sort breaking the circularity in circular analyses: simulations and formal treatment of the flattened average approach
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7721178/
https://www.ncbi.nlm.nih.gov/pubmed/33226982
http://dx.doi.org/10.1371/journal.pcbi.1008286
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