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Deep learning model for classification and bioactivity prediction of essential oil-producing plants from Egypt

Reliance on deep learning techniques has become an important trend in several science domains including biological science, due to its proven efficiency in manipulating big data that are often characterized by their non-linear processes and complicated relationships. In this study, Convolutional Neu...

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Autores principales: El-Attar, Noha E., Hassan, Mohamed K., Alghamdi, Othman A., Awad, Wael A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7721748/
https://www.ncbi.nlm.nih.gov/pubmed/33288845
http://dx.doi.org/10.1038/s41598-020-78449-1
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author El-Attar, Noha E.
Hassan, Mohamed K.
Alghamdi, Othman A.
Awad, Wael A.
author_facet El-Attar, Noha E.
Hassan, Mohamed K.
Alghamdi, Othman A.
Awad, Wael A.
author_sort El-Attar, Noha E.
collection PubMed
description Reliance on deep learning techniques has become an important trend in several science domains including biological science, due to its proven efficiency in manipulating big data that are often characterized by their non-linear processes and complicated relationships. In this study, Convolutional Neural Networks (CNN) has been recruited, as one of the deep learning techniques, to be used in classifying and predicting the biological activities of the essential oil-producing plant/s through their chemical compositions. The model is established based on the available chemical composition’s information of a set of endemic Egyptian plants and their biological activities. Another type of machine learning algorithms, Multiclass Neural Network (MNN), has been applied on the same Essential Oils (EO) dataset. This aims to fairly evaluate the performance of the proposed CNN model. The recorded accuracy in the testing process for both CNN and MNN is 98.13% and 81.88%, respectively. Finally, the CNN technique has been adopted as a reliable model for classifying and predicting the bioactivities of the Egyptian EO-containing plants. The overall accuracy for the final prediction process is reported as approximately 97%. Hereby, the proposed deep learning model could be utilized as an efficient model in predicting the bioactivities of, at least Egyptian, EOs-producing plants.
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spelling pubmed-77217482020-12-08 Deep learning model for classification and bioactivity prediction of essential oil-producing plants from Egypt El-Attar, Noha E. Hassan, Mohamed K. Alghamdi, Othman A. Awad, Wael A. Sci Rep Article Reliance on deep learning techniques has become an important trend in several science domains including biological science, due to its proven efficiency in manipulating big data that are often characterized by their non-linear processes and complicated relationships. In this study, Convolutional Neural Networks (CNN) has been recruited, as one of the deep learning techniques, to be used in classifying and predicting the biological activities of the essential oil-producing plant/s through their chemical compositions. The model is established based on the available chemical composition’s information of a set of endemic Egyptian plants and their biological activities. Another type of machine learning algorithms, Multiclass Neural Network (MNN), has been applied on the same Essential Oils (EO) dataset. This aims to fairly evaluate the performance of the proposed CNN model. The recorded accuracy in the testing process for both CNN and MNN is 98.13% and 81.88%, respectively. Finally, the CNN technique has been adopted as a reliable model for classifying and predicting the bioactivities of the Egyptian EO-containing plants. The overall accuracy for the final prediction process is reported as approximately 97%. Hereby, the proposed deep learning model could be utilized as an efficient model in predicting the bioactivities of, at least Egyptian, EOs-producing plants. Nature Publishing Group UK 2020-12-07 /pmc/articles/PMC7721748/ /pubmed/33288845 http://dx.doi.org/10.1038/s41598-020-78449-1 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
El-Attar, Noha E.
Hassan, Mohamed K.
Alghamdi, Othman A.
Awad, Wael A.
Deep learning model for classification and bioactivity prediction of essential oil-producing plants from Egypt
title Deep learning model for classification and bioactivity prediction of essential oil-producing plants from Egypt
title_full Deep learning model for classification and bioactivity prediction of essential oil-producing plants from Egypt
title_fullStr Deep learning model for classification and bioactivity prediction of essential oil-producing plants from Egypt
title_full_unstemmed Deep learning model for classification and bioactivity prediction of essential oil-producing plants from Egypt
title_short Deep learning model for classification and bioactivity prediction of essential oil-producing plants from Egypt
title_sort deep learning model for classification and bioactivity prediction of essential oil-producing plants from egypt
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7721748/
https://www.ncbi.nlm.nih.gov/pubmed/33288845
http://dx.doi.org/10.1038/s41598-020-78449-1
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