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Phase imaging with computational specificity (PICS) for measuring dry mass changes in sub-cellular compartments
Due to its specificity, fluorescence microscopy has become a quintessential imaging tool in cell biology. However, photobleaching, phototoxicity, and related artifacts continue to limit fluorescence microscopy’s utility. Recently, it has been shown that artificial intelligence (AI) can transform one...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7721808/ https://www.ncbi.nlm.nih.gov/pubmed/33288761 http://dx.doi.org/10.1038/s41467-020-20062-x |
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author | Kandel, Mikhail E. He, Yuchen R. Lee, Young Jae Chen, Taylor Hsuan-Yu Sullivan, Kathryn Michele Aydin, Onur Saif, M. Taher A. Kong, Hyunjoon Sobh, Nahil Popescu, Gabriel |
author_facet | Kandel, Mikhail E. He, Yuchen R. Lee, Young Jae Chen, Taylor Hsuan-Yu Sullivan, Kathryn Michele Aydin, Onur Saif, M. Taher A. Kong, Hyunjoon Sobh, Nahil Popescu, Gabriel |
author_sort | Kandel, Mikhail E. |
collection | PubMed |
description | Due to its specificity, fluorescence microscopy has become a quintessential imaging tool in cell biology. However, photobleaching, phototoxicity, and related artifacts continue to limit fluorescence microscopy’s utility. Recently, it has been shown that artificial intelligence (AI) can transform one form of contrast into another. We present phase imaging with computational specificity (PICS), a combination of quantitative phase imaging and AI, which provides information about unlabeled live cells with high specificity. Our imaging system allows for automatic training, while inference is built into the acquisition software and runs in real-time. Applying the computed fluorescence maps back to the quantitative phase imaging (QPI) data, we measured the growth of both nuclei and cytoplasm independently, over many days, without loss of viability. Using a QPI method that suppresses multiple scattering, we measured the dry mass content of individual cell nuclei within spheroids. In its current implementation, PICS offers a versatile quantitative technique for continuous simultaneous monitoring of individual cellular components in biological applications where long-term label-free imaging is desirable. |
format | Online Article Text |
id | pubmed-7721808 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-77218082020-12-11 Phase imaging with computational specificity (PICS) for measuring dry mass changes in sub-cellular compartments Kandel, Mikhail E. He, Yuchen R. Lee, Young Jae Chen, Taylor Hsuan-Yu Sullivan, Kathryn Michele Aydin, Onur Saif, M. Taher A. Kong, Hyunjoon Sobh, Nahil Popescu, Gabriel Nat Commun Article Due to its specificity, fluorescence microscopy has become a quintessential imaging tool in cell biology. However, photobleaching, phototoxicity, and related artifacts continue to limit fluorescence microscopy’s utility. Recently, it has been shown that artificial intelligence (AI) can transform one form of contrast into another. We present phase imaging with computational specificity (PICS), a combination of quantitative phase imaging and AI, which provides information about unlabeled live cells with high specificity. Our imaging system allows for automatic training, while inference is built into the acquisition software and runs in real-time. Applying the computed fluorescence maps back to the quantitative phase imaging (QPI) data, we measured the growth of both nuclei and cytoplasm independently, over many days, without loss of viability. Using a QPI method that suppresses multiple scattering, we measured the dry mass content of individual cell nuclei within spheroids. In its current implementation, PICS offers a versatile quantitative technique for continuous simultaneous monitoring of individual cellular components in biological applications where long-term label-free imaging is desirable. Nature Publishing Group UK 2020-12-07 /pmc/articles/PMC7721808/ /pubmed/33288761 http://dx.doi.org/10.1038/s41467-020-20062-x Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Kandel, Mikhail E. He, Yuchen R. Lee, Young Jae Chen, Taylor Hsuan-Yu Sullivan, Kathryn Michele Aydin, Onur Saif, M. Taher A. Kong, Hyunjoon Sobh, Nahil Popescu, Gabriel Phase imaging with computational specificity (PICS) for measuring dry mass changes in sub-cellular compartments |
title | Phase imaging with computational specificity (PICS) for measuring dry mass changes in sub-cellular compartments |
title_full | Phase imaging with computational specificity (PICS) for measuring dry mass changes in sub-cellular compartments |
title_fullStr | Phase imaging with computational specificity (PICS) for measuring dry mass changes in sub-cellular compartments |
title_full_unstemmed | Phase imaging with computational specificity (PICS) for measuring dry mass changes in sub-cellular compartments |
title_short | Phase imaging with computational specificity (PICS) for measuring dry mass changes in sub-cellular compartments |
title_sort | phase imaging with computational specificity (pics) for measuring dry mass changes in sub-cellular compartments |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7721808/ https://www.ncbi.nlm.nih.gov/pubmed/33288761 http://dx.doi.org/10.1038/s41467-020-20062-x |
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