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The importance of making testable predictions: A cautionary tale
We found a startling correlation (Pearson ρ > 0.97) between a single event in daily sea surface temperatures each spring, and peak fish egg abundance measurements the following summer, in 7 years of approximately weekly fish egg abundance data collected at Scripps Pier in La Jolla California. Eve...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7723288/ https://www.ncbi.nlm.nih.gov/pubmed/33290401 http://dx.doi.org/10.1371/journal.pone.0236541 |
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author | Choi, Emma S. Saberski, Erik Lorimer, Tom Smith, Cameron Kandage-don, Unduwap Burton, Ronald S. Sugihara, George |
author_facet | Choi, Emma S. Saberski, Erik Lorimer, Tom Smith, Cameron Kandage-don, Unduwap Burton, Ronald S. Sugihara, George |
author_sort | Choi, Emma S. |
collection | PubMed |
description | We found a startling correlation (Pearson ρ > 0.97) between a single event in daily sea surface temperatures each spring, and peak fish egg abundance measurements the following summer, in 7 years of approximately weekly fish egg abundance data collected at Scripps Pier in La Jolla California. Even more surprising was that this event-based result persisted despite the large and variable number of fish species involved (up to 46), and the large and variable time interval between trigger and response (up to ~3 months). To mitigate potential over-fitting, we made an out-of-sample prediction beyond the publication process for the peak summer egg abundance observed at Scripps Pier in 2020 (available on bioRxiv). During peer-review, the prediction failed, and while it would be tempting to explain this away as a result of the record-breaking toxic algal bloom that occurred during the spring (9x higher concentration of dinoflagellates than ever previously recorded), a re-examination of our methodology revealed a potential source of over-fitting that had not been evaluated for robustness. This cautionary tale highlights the importance of testable true out-of-sample predictions of future values that cannot (even accidentally) be used in model fitting, and that can therefore catch model assumptions that may otherwise escape notice. We believe that this example can benefit the current push towards ecology as a predictive science and support the notion that predictions should live and die in the public domain, along with the models that made them. |
format | Online Article Text |
id | pubmed-7723288 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-77232882020-12-16 The importance of making testable predictions: A cautionary tale Choi, Emma S. Saberski, Erik Lorimer, Tom Smith, Cameron Kandage-don, Unduwap Burton, Ronald S. Sugihara, George PLoS One Research Article We found a startling correlation (Pearson ρ > 0.97) between a single event in daily sea surface temperatures each spring, and peak fish egg abundance measurements the following summer, in 7 years of approximately weekly fish egg abundance data collected at Scripps Pier in La Jolla California. Even more surprising was that this event-based result persisted despite the large and variable number of fish species involved (up to 46), and the large and variable time interval between trigger and response (up to ~3 months). To mitigate potential over-fitting, we made an out-of-sample prediction beyond the publication process for the peak summer egg abundance observed at Scripps Pier in 2020 (available on bioRxiv). During peer-review, the prediction failed, and while it would be tempting to explain this away as a result of the record-breaking toxic algal bloom that occurred during the spring (9x higher concentration of dinoflagellates than ever previously recorded), a re-examination of our methodology revealed a potential source of over-fitting that had not been evaluated for robustness. This cautionary tale highlights the importance of testable true out-of-sample predictions of future values that cannot (even accidentally) be used in model fitting, and that can therefore catch model assumptions that may otherwise escape notice. We believe that this example can benefit the current push towards ecology as a predictive science and support the notion that predictions should live and die in the public domain, along with the models that made them. Public Library of Science 2020-12-08 /pmc/articles/PMC7723288/ /pubmed/33290401 http://dx.doi.org/10.1371/journal.pone.0236541 Text en © 2020 Choi et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Choi, Emma S. Saberski, Erik Lorimer, Tom Smith, Cameron Kandage-don, Unduwap Burton, Ronald S. Sugihara, George The importance of making testable predictions: A cautionary tale |
title | The importance of making testable predictions: A cautionary tale |
title_full | The importance of making testable predictions: A cautionary tale |
title_fullStr | The importance of making testable predictions: A cautionary tale |
title_full_unstemmed | The importance of making testable predictions: A cautionary tale |
title_short | The importance of making testable predictions: A cautionary tale |
title_sort | importance of making testable predictions: a cautionary tale |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7723288/ https://www.ncbi.nlm.nih.gov/pubmed/33290401 http://dx.doi.org/10.1371/journal.pone.0236541 |
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