Cargando…

Range of reproduction number estimates for COVID-19 spread

To monitor local and global COVID-19 outbreaks, and to plan containment measures, accessible and comprehensible decision-making tools need to be based on the growth rates of new confirmed infections, hospitalization or case fatality rates. Growth rates of new cases form the empirical basis for estim...

Descripción completa

Detalles Bibliográficos
Autores principales: Pasetto, Damiano, Lemaitre, Joseph C., Bertuzzo, Enrico, Gatto, Marino, Rinaldo, Andrea
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Authors. Published by Elsevier Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7723757/
https://www.ncbi.nlm.nih.gov/pubmed/33342517
http://dx.doi.org/10.1016/j.bbrc.2020.12.003
_version_ 1783620409743114240
author Pasetto, Damiano
Lemaitre, Joseph C.
Bertuzzo, Enrico
Gatto, Marino
Rinaldo, Andrea
author_facet Pasetto, Damiano
Lemaitre, Joseph C.
Bertuzzo, Enrico
Gatto, Marino
Rinaldo, Andrea
author_sort Pasetto, Damiano
collection PubMed
description To monitor local and global COVID-19 outbreaks, and to plan containment measures, accessible and comprehensible decision-making tools need to be based on the growth rates of new confirmed infections, hospitalization or case fatality rates. Growth rates of new cases form the empirical basis for estimates of a variety of reproduction numbers, dimensionless numbers whose value, when larger than unity, describes surging infections and generally worsening epidemiological conditions. Typically, these determinations rely on noisy or incomplete data gained over limited periods of time, and on many parameters to estimate. This paper examines how estimates from data and models of time-evolving reproduction numbers of national COVID-19 infection spread change by using different techniques and assumptions. Given the importance acquired by reproduction numbers as diagnostic tools, assessing their range of possible variations obtainable from the same epidemiological data is relevant. We compute control reproduction numbers from Swiss and Italian COVID-19 time series adopting both data convolution (renewal equation) and a SEIR-type model. Within these two paradigms we run a comparative analysis of the possible inferences obtained through approximations of the distributions typically used to describe serial intervals, generation, latency and incubation times, and the delays between onset of symptoms and notification. Our results suggest that estimates of reproduction numbers under these different assumptions may show significant temporal differences, while the actual variability range of computed values is rather small.
format Online
Article
Text
id pubmed-7723757
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher The Authors. Published by Elsevier Inc.
record_format MEDLINE/PubMed
spelling pubmed-77237572020-12-10 Range of reproduction number estimates for COVID-19 spread Pasetto, Damiano Lemaitre, Joseph C. Bertuzzo, Enrico Gatto, Marino Rinaldo, Andrea Biochem Biophys Res Commun Article To monitor local and global COVID-19 outbreaks, and to plan containment measures, accessible and comprehensible decision-making tools need to be based on the growth rates of new confirmed infections, hospitalization or case fatality rates. Growth rates of new cases form the empirical basis for estimates of a variety of reproduction numbers, dimensionless numbers whose value, when larger than unity, describes surging infections and generally worsening epidemiological conditions. Typically, these determinations rely on noisy or incomplete data gained over limited periods of time, and on many parameters to estimate. This paper examines how estimates from data and models of time-evolving reproduction numbers of national COVID-19 infection spread change by using different techniques and assumptions. Given the importance acquired by reproduction numbers as diagnostic tools, assessing their range of possible variations obtainable from the same epidemiological data is relevant. We compute control reproduction numbers from Swiss and Italian COVID-19 time series adopting both data convolution (renewal equation) and a SEIR-type model. Within these two paradigms we run a comparative analysis of the possible inferences obtained through approximations of the distributions typically used to describe serial intervals, generation, latency and incubation times, and the delays between onset of symptoms and notification. Our results suggest that estimates of reproduction numbers under these different assumptions may show significant temporal differences, while the actual variability range of computed values is rather small. The Authors. Published by Elsevier Inc. 2021-01-29 2020-12-09 /pmc/articles/PMC7723757/ /pubmed/33342517 http://dx.doi.org/10.1016/j.bbrc.2020.12.003 Text en © 2021 The Authors Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Article
Pasetto, Damiano
Lemaitre, Joseph C.
Bertuzzo, Enrico
Gatto, Marino
Rinaldo, Andrea
Range of reproduction number estimates for COVID-19 spread
title Range of reproduction number estimates for COVID-19 spread
title_full Range of reproduction number estimates for COVID-19 spread
title_fullStr Range of reproduction number estimates for COVID-19 spread
title_full_unstemmed Range of reproduction number estimates for COVID-19 spread
title_short Range of reproduction number estimates for COVID-19 spread
title_sort range of reproduction number estimates for covid-19 spread
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7723757/
https://www.ncbi.nlm.nih.gov/pubmed/33342517
http://dx.doi.org/10.1016/j.bbrc.2020.12.003
work_keys_str_mv AT pasettodamiano rangeofreproductionnumberestimatesforcovid19spread
AT lemaitrejosephc rangeofreproductionnumberestimatesforcovid19spread
AT bertuzzoenrico rangeofreproductionnumberestimatesforcovid19spread
AT gattomarino rangeofreproductionnumberestimatesforcovid19spread
AT rinaldoandrea rangeofreproductionnumberestimatesforcovid19spread