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Predictive modeling of morbidity and mortality in COVID-19 hospitalized patients and its clinical implications.

Clinical activity of 3740 de-identified COVID-19 positive patients treated at NYU Langone Health (NYULH) were collected between January and August 2020. XGBoost model trained on clinical data from the final 24 hours excelled at predicting mortality (AUC=0.92, specificity=86% and sensitivity=85%). Re...

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Autores principales: Wang, Joshua M., Liu, Wenke, Chen, Xiaoshan, McRae, Michael P., McDevitt, John T., Fenyö, David
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Cold Spring Harbor Laboratory 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7724684/
https://www.ncbi.nlm.nih.gov/pubmed/33300013
http://dx.doi.org/10.1101/2020.12.02.20235879
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author Wang, Joshua M.
Liu, Wenke
Chen, Xiaoshan
McRae, Michael P.
McDevitt, John T.
Fenyö, David
author_facet Wang, Joshua M.
Liu, Wenke
Chen, Xiaoshan
McRae, Michael P.
McDevitt, John T.
Fenyö, David
author_sort Wang, Joshua M.
collection PubMed
description Clinical activity of 3740 de-identified COVID-19 positive patients treated at NYU Langone Health (NYULH) were collected between January and August 2020. XGBoost model trained on clinical data from the final 24 hours excelled at predicting mortality (AUC=0.92, specificity=86% and sensitivity=85%). Respiration rate was the most important feature, followed by SpO2 and age 75+. Performance of this model to predict the deceased outcome extended 5 days prior with AUC=0.81, specificity=70%, sensitivity=75%. When only using clinical data from the first 24 hours, AUCs of 0.79, 0.80, and 0.77 were obtained for deceased, ventilated, or ICU admitted, respectively. Although respiration rate and SpO2 levels offered the highest feature importance, other canonical markers including diabetic history, age and temperature offered minimal gain. When lab values were incorporated, prediction of mortality benefited the most from blood urea nitrogen (BUN) and lactate dehydrogenase (LDH). Features predictive of morbidity included LDH, calcium, glucose, and C-reactive protein (CRP). Together this work summarizes efforts to systematically examine the importance of a wide range of features across different endpoint outcomes and at different hospitalization time points.
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spelling pubmed-77246842020-12-10 Predictive modeling of morbidity and mortality in COVID-19 hospitalized patients and its clinical implications. Wang, Joshua M. Liu, Wenke Chen, Xiaoshan McRae, Michael P. McDevitt, John T. Fenyö, David medRxiv Article Clinical activity of 3740 de-identified COVID-19 positive patients treated at NYU Langone Health (NYULH) were collected between January and August 2020. XGBoost model trained on clinical data from the final 24 hours excelled at predicting mortality (AUC=0.92, specificity=86% and sensitivity=85%). Respiration rate was the most important feature, followed by SpO2 and age 75+. Performance of this model to predict the deceased outcome extended 5 days prior with AUC=0.81, specificity=70%, sensitivity=75%. When only using clinical data from the first 24 hours, AUCs of 0.79, 0.80, and 0.77 were obtained for deceased, ventilated, or ICU admitted, respectively. Although respiration rate and SpO2 levels offered the highest feature importance, other canonical markers including diabetic history, age and temperature offered minimal gain. When lab values were incorporated, prediction of mortality benefited the most from blood urea nitrogen (BUN) and lactate dehydrogenase (LDH). Features predictive of morbidity included LDH, calcium, glucose, and C-reactive protein (CRP). Together this work summarizes efforts to systematically examine the importance of a wide range of features across different endpoint outcomes and at different hospitalization time points. Cold Spring Harbor Laboratory 2021-03-29 /pmc/articles/PMC7724684/ /pubmed/33300013 http://dx.doi.org/10.1101/2020.12.02.20235879 Text en https://creativecommons.org/licenses/by-nc-nd/4.0/This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License (https://creativecommons.org/licenses/by-nc-nd/4.0/) , which allows reusers to copy and distribute the material in any medium or format in unadapted form only, for noncommercial purposes only, and only so long as attribution is given to the creator.
spellingShingle Article
Wang, Joshua M.
Liu, Wenke
Chen, Xiaoshan
McRae, Michael P.
McDevitt, John T.
Fenyö, David
Predictive modeling of morbidity and mortality in COVID-19 hospitalized patients and its clinical implications.
title Predictive modeling of morbidity and mortality in COVID-19 hospitalized patients and its clinical implications.
title_full Predictive modeling of morbidity and mortality in COVID-19 hospitalized patients and its clinical implications.
title_fullStr Predictive modeling of morbidity and mortality in COVID-19 hospitalized patients and its clinical implications.
title_full_unstemmed Predictive modeling of morbidity and mortality in COVID-19 hospitalized patients and its clinical implications.
title_short Predictive modeling of morbidity and mortality in COVID-19 hospitalized patients and its clinical implications.
title_sort predictive modeling of morbidity and mortality in covid-19 hospitalized patients and its clinical implications.
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7724684/
https://www.ncbi.nlm.nih.gov/pubmed/33300013
http://dx.doi.org/10.1101/2020.12.02.20235879
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