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COVID-19 mortality risk assessment: An international multi-center study
Timely identification of COVID-19 patients at high risk of mortality can significantly improve patient management and resource allocation within hospitals. This study seeks to develop and validate a data-driven personalized mortality risk calculator for hospitalized COVID-19 patients. De-identified...
Autores principales: | , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7725386/ https://www.ncbi.nlm.nih.gov/pubmed/33296405 http://dx.doi.org/10.1371/journal.pone.0243262 |
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author | Bertsimas, Dimitris Lukin, Galit Mingardi, Luca Nohadani, Omid Orfanoudaki, Agni Stellato, Bartolomeo Wiberg, Holly Gonzalez-Garcia, Sara Parra-Calderón, Carlos Luis Robinson, Kenneth Schneider, Michelle Stein, Barry Estirado, Alberto a Beccara, Lia Canino, Rosario Dal Bello, Martina Pezzetti, Federica Pan, Angelo |
author_facet | Bertsimas, Dimitris Lukin, Galit Mingardi, Luca Nohadani, Omid Orfanoudaki, Agni Stellato, Bartolomeo Wiberg, Holly Gonzalez-Garcia, Sara Parra-Calderón, Carlos Luis Robinson, Kenneth Schneider, Michelle Stein, Barry Estirado, Alberto a Beccara, Lia Canino, Rosario Dal Bello, Martina Pezzetti, Federica Pan, Angelo |
author_sort | Bertsimas, Dimitris |
collection | PubMed |
description | Timely identification of COVID-19 patients at high risk of mortality can significantly improve patient management and resource allocation within hospitals. This study seeks to develop and validate a data-driven personalized mortality risk calculator for hospitalized COVID-19 patients. De-identified data was obtained for 3,927 COVID-19 positive patients from six independent centers, comprising 33 different hospitals. Demographic, clinical, and laboratory variables were collected at hospital admission. The COVID-19 Mortality Risk (CMR) tool was developed using the XGBoost algorithm to predict mortality. Its discrimination performance was subsequently evaluated on three validation cohorts. The derivation cohort of 3,062 patients has an observed mortality rate of 26.84%. Increased age, decreased oxygen saturation (≤ 93%), elevated levels of C-reactive protein (≥ 130 mg/L), blood urea nitrogen (≥ 18 mg/dL), and blood creatinine (≥ 1.2 mg/dL) were identified as primary risk factors, validating clinical findings. The model obtains out-of-sample AUCs of 0.90 (95% CI, 0.87–0.94) on the derivation cohort. In the validation cohorts, the model obtains AUCs of 0.92 (95% CI, 0.88–0.95) on Seville patients, 0.87 (95% CI, 0.84–0.91) on Hellenic COVID-19 Study Group patients, and 0.81 (95% CI, 0.76–0.85) on Hartford Hospital patients. The CMR tool is available as an online application at covidanalytics.io/mortality_calculator and is currently in clinical use. The CMR model leverages machine learning to generate accurate mortality predictions using commonly available clinical features. This is the first risk score trained and validated on a cohort of COVID-19 patients from Europe and the United States. |
format | Online Article Text |
id | pubmed-7725386 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-77253862020-12-16 COVID-19 mortality risk assessment: An international multi-center study Bertsimas, Dimitris Lukin, Galit Mingardi, Luca Nohadani, Omid Orfanoudaki, Agni Stellato, Bartolomeo Wiberg, Holly Gonzalez-Garcia, Sara Parra-Calderón, Carlos Luis Robinson, Kenneth Schneider, Michelle Stein, Barry Estirado, Alberto a Beccara, Lia Canino, Rosario Dal Bello, Martina Pezzetti, Federica Pan, Angelo PLoS One Research Article Timely identification of COVID-19 patients at high risk of mortality can significantly improve patient management and resource allocation within hospitals. This study seeks to develop and validate a data-driven personalized mortality risk calculator for hospitalized COVID-19 patients. De-identified data was obtained for 3,927 COVID-19 positive patients from six independent centers, comprising 33 different hospitals. Demographic, clinical, and laboratory variables were collected at hospital admission. The COVID-19 Mortality Risk (CMR) tool was developed using the XGBoost algorithm to predict mortality. Its discrimination performance was subsequently evaluated on three validation cohorts. The derivation cohort of 3,062 patients has an observed mortality rate of 26.84%. Increased age, decreased oxygen saturation (≤ 93%), elevated levels of C-reactive protein (≥ 130 mg/L), blood urea nitrogen (≥ 18 mg/dL), and blood creatinine (≥ 1.2 mg/dL) were identified as primary risk factors, validating clinical findings. The model obtains out-of-sample AUCs of 0.90 (95% CI, 0.87–0.94) on the derivation cohort. In the validation cohorts, the model obtains AUCs of 0.92 (95% CI, 0.88–0.95) on Seville patients, 0.87 (95% CI, 0.84–0.91) on Hellenic COVID-19 Study Group patients, and 0.81 (95% CI, 0.76–0.85) on Hartford Hospital patients. The CMR tool is available as an online application at covidanalytics.io/mortality_calculator and is currently in clinical use. The CMR model leverages machine learning to generate accurate mortality predictions using commonly available clinical features. This is the first risk score trained and validated on a cohort of COVID-19 patients from Europe and the United States. Public Library of Science 2020-12-09 /pmc/articles/PMC7725386/ /pubmed/33296405 http://dx.doi.org/10.1371/journal.pone.0243262 Text en © 2020 Bertsimas et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Bertsimas, Dimitris Lukin, Galit Mingardi, Luca Nohadani, Omid Orfanoudaki, Agni Stellato, Bartolomeo Wiberg, Holly Gonzalez-Garcia, Sara Parra-Calderón, Carlos Luis Robinson, Kenneth Schneider, Michelle Stein, Barry Estirado, Alberto a Beccara, Lia Canino, Rosario Dal Bello, Martina Pezzetti, Federica Pan, Angelo COVID-19 mortality risk assessment: An international multi-center study |
title | COVID-19 mortality risk assessment: An international multi-center study |
title_full | COVID-19 mortality risk assessment: An international multi-center study |
title_fullStr | COVID-19 mortality risk assessment: An international multi-center study |
title_full_unstemmed | COVID-19 mortality risk assessment: An international multi-center study |
title_short | COVID-19 mortality risk assessment: An international multi-center study |
title_sort | covid-19 mortality risk assessment: an international multi-center study |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7725386/ https://www.ncbi.nlm.nih.gov/pubmed/33296405 http://dx.doi.org/10.1371/journal.pone.0243262 |
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