Cargando…
Charge-Changing Perturbations and Path Sampling via Classical Molecular Dynamic Simulations of Simple Guest–Host Systems
[Image: see text] Currently, two different methods dominate the field of biomolecular free-energy calculations for the prediction of binding affinities. Pathway methods are frequently used for large ligands that bind on the surface of a host, such as protein–protein complexes. Alchemical methods, on...
Autores principales: | Öhlknecht, Christoph, Perthold, Jan Walther, Lier, Bettina, Oostenbrink, Chris |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2020
|
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7726903/ https://www.ncbi.nlm.nih.gov/pubmed/33136389 http://dx.doi.org/10.1021/acs.jctc.0c00719 |
Ejemplares similares
-
Simulation of Reversible Protein–Protein Binding
and Calculation of Binding Free Energies Using Perturbed Distance
Restraints
por: Perthold, Jan Walther, et al.
Publicado: (2017) -
Toward Automated Free Energy Calculation with Accelerated
Enveloping Distribution Sampling (A-EDS)
por: Perthold, Jan Walther, et al.
Publicado: (2020) -
Net charge changes in the calculation of relative ligand-binding free energies via classical atomistic molecular dynamics simulation
por: Reif, Maria M, et al.
Publicado: (2014) -
PROFICS: A bacterial selection system for directed evolution of proteases
por: Kröß, Christina, et al.
Publicado: (2021) -
Insights into the
Binding Mode of Lipid A to the Anti-lipopolysaccharide
Factor ALFPm3 from Penaeus monodon:
An In Silico Study through MD Simulations
por: González-Fernández, Cristina, et al.
Publicado: (2023)