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Carbon Atoms Speaking Out: How the Geometric Sensitivity of (13)C Chemical Shifts Leads to Understanding the Colour Tuning of Phycocyanobilin in Cph1 and AnPixJ

We present a combined quantum mechanics/molecular mechanics (QM/MM) molecular dynamics–statistical approach for the interpretation of nuclear magnetic resonance (NMR) chemical shift patterns in phycocyanobilin (PCB). These were originally associated with colour tuning upon photoproduct formation in...

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Autores principales: Jähnigen, Sascha, Sebastiani, Daniel
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7727823/
https://www.ncbi.nlm.nih.gov/pubmed/33255423
http://dx.doi.org/10.3390/molecules25235505
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author Jähnigen, Sascha
Sebastiani, Daniel
author_facet Jähnigen, Sascha
Sebastiani, Daniel
author_sort Jähnigen, Sascha
collection PubMed
description We present a combined quantum mechanics/molecular mechanics (QM/MM) molecular dynamics–statistical approach for the interpretation of nuclear magnetic resonance (NMR) chemical shift patterns in phycocyanobilin (PCB). These were originally associated with colour tuning upon photoproduct formation in red/green-absorbing cyanobacteriochrome AnPixJg2 and red/far-red-absorbing phytochrome Cph1 [Formula: see text] 2. We pursue an indirect approach without computation of the absorption frequencies since the molecular geometry of cofactor and protein are not accurately known. Instead, we resort to a heuristic determination of the conjugation length in PCB through the experimental NMR chemical shift patterns, supported by quantum chemical calculations. We have found a characteristic correlation pattern of [Formula: see text] C chemical shifts to specific bond orders within the [Formula: see text]-conjugated system, which rests on the relative position of carbon atoms with respect to electron-withdrawing groups and the polarisation of covalent bonds. We propose the inversion of this regioselective relationship using multivariate statistics and to apply it to the known experimental NMR chemical shifts in order to predict changes in the bond alternation pattern. Therefrom the extent of electronic conjugation, and eventually the change in absorption frequency, can be derived. In the process, the consultation of explicit mesomeric formulae plays an important role to qualitatively account for possible conjugation scenarios of the chromophore. While we are able to consistently associate the NMR chemical shifts with hypsochromic and bathochromic shifts in the P [Formula: see text] and P [Formula: see text] , our approach represents an alternative method to increase the explanatory power of NMR spectroscopic data in proteins.
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spelling pubmed-77278232020-12-11 Carbon Atoms Speaking Out: How the Geometric Sensitivity of (13)C Chemical Shifts Leads to Understanding the Colour Tuning of Phycocyanobilin in Cph1 and AnPixJ Jähnigen, Sascha Sebastiani, Daniel Molecules Article We present a combined quantum mechanics/molecular mechanics (QM/MM) molecular dynamics–statistical approach for the interpretation of nuclear magnetic resonance (NMR) chemical shift patterns in phycocyanobilin (PCB). These were originally associated with colour tuning upon photoproduct formation in red/green-absorbing cyanobacteriochrome AnPixJg2 and red/far-red-absorbing phytochrome Cph1 [Formula: see text] 2. We pursue an indirect approach without computation of the absorption frequencies since the molecular geometry of cofactor and protein are not accurately known. Instead, we resort to a heuristic determination of the conjugation length in PCB through the experimental NMR chemical shift patterns, supported by quantum chemical calculations. We have found a characteristic correlation pattern of [Formula: see text] C chemical shifts to specific bond orders within the [Formula: see text]-conjugated system, which rests on the relative position of carbon atoms with respect to electron-withdrawing groups and the polarisation of covalent bonds. We propose the inversion of this regioselective relationship using multivariate statistics and to apply it to the known experimental NMR chemical shifts in order to predict changes in the bond alternation pattern. Therefrom the extent of electronic conjugation, and eventually the change in absorption frequency, can be derived. In the process, the consultation of explicit mesomeric formulae plays an important role to qualitatively account for possible conjugation scenarios of the chromophore. While we are able to consistently associate the NMR chemical shifts with hypsochromic and bathochromic shifts in the P [Formula: see text] and P [Formula: see text] , our approach represents an alternative method to increase the explanatory power of NMR spectroscopic data in proteins. MDPI 2020-11-24 /pmc/articles/PMC7727823/ /pubmed/33255423 http://dx.doi.org/10.3390/molecules25235505 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Jähnigen, Sascha
Sebastiani, Daniel
Carbon Atoms Speaking Out: How the Geometric Sensitivity of (13)C Chemical Shifts Leads to Understanding the Colour Tuning of Phycocyanobilin in Cph1 and AnPixJ
title Carbon Atoms Speaking Out: How the Geometric Sensitivity of (13)C Chemical Shifts Leads to Understanding the Colour Tuning of Phycocyanobilin in Cph1 and AnPixJ
title_full Carbon Atoms Speaking Out: How the Geometric Sensitivity of (13)C Chemical Shifts Leads to Understanding the Colour Tuning of Phycocyanobilin in Cph1 and AnPixJ
title_fullStr Carbon Atoms Speaking Out: How the Geometric Sensitivity of (13)C Chemical Shifts Leads to Understanding the Colour Tuning of Phycocyanobilin in Cph1 and AnPixJ
title_full_unstemmed Carbon Atoms Speaking Out: How the Geometric Sensitivity of (13)C Chemical Shifts Leads to Understanding the Colour Tuning of Phycocyanobilin in Cph1 and AnPixJ
title_short Carbon Atoms Speaking Out: How the Geometric Sensitivity of (13)C Chemical Shifts Leads to Understanding the Colour Tuning of Phycocyanobilin in Cph1 and AnPixJ
title_sort carbon atoms speaking out: how the geometric sensitivity of (13)c chemical shifts leads to understanding the colour tuning of phycocyanobilin in cph1 and anpixj
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7727823/
https://www.ncbi.nlm.nih.gov/pubmed/33255423
http://dx.doi.org/10.3390/molecules25235505
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