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Identification and Characterization of PLATZ Transcription Factors in Wheat

The PLATZ (plant AT-rich protein and zinc-binding protein) transcription factor family is a class of plant-specific zinc-dependent DNA-binding proteins. PLATZ has essential roles in seed endosperm development, as well as promoting cell proliferation duration in the earlier stages of the crops. In th...

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Autores principales: Fu, Yuxin, Cheng, Mengping, Li, Maolian, Guo, Xiaojiang, Wu, Yongrui, Wang, Jirui
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7728089/
https://www.ncbi.nlm.nih.gov/pubmed/33255649
http://dx.doi.org/10.3390/ijms21238934
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author Fu, Yuxin
Cheng, Mengping
Li, Maolian
Guo, Xiaojiang
Wu, Yongrui
Wang, Jirui
author_facet Fu, Yuxin
Cheng, Mengping
Li, Maolian
Guo, Xiaojiang
Wu, Yongrui
Wang, Jirui
author_sort Fu, Yuxin
collection PubMed
description The PLATZ (plant AT-rich protein and zinc-binding protein) transcription factor family is a class of plant-specific zinc-dependent DNA-binding proteins. PLATZ has essential roles in seed endosperm development, as well as promoting cell proliferation duration in the earlier stages of the crops. In the present study, 62 TaPLATZ genes were identified from the wheat genome, and they were unequally distributed on 15 chromosomes. According to the phylogenetic analysis, 62 TaPLATZ genes were classified into six groups, including two groups that were unique in wheat. Members in the same groups shared similar exon-intron structures. The polyploidization, together with genome duplication of wheat, plays a crucial role in the expansion of the TaPLATZs family. Transcriptome data indicated a distinct divergence expression pattern of TaPLATZ genes that could be clustered into four modules. The TaPLATZs in Module b possessed a seed-specific expression pattern and displayed obvious high expression in the earlier development stage of seeds. Subcellular localization data of TaPLATZs suggesting that they likely perform a function as a conventional transcription factor. This study provides insight into understanding the structure divergence, evolutionary features, expression profiles, and potential function of PLATZ in wheat.
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spelling pubmed-77280892020-12-11 Identification and Characterization of PLATZ Transcription Factors in Wheat Fu, Yuxin Cheng, Mengping Li, Maolian Guo, Xiaojiang Wu, Yongrui Wang, Jirui Int J Mol Sci Article The PLATZ (plant AT-rich protein and zinc-binding protein) transcription factor family is a class of plant-specific zinc-dependent DNA-binding proteins. PLATZ has essential roles in seed endosperm development, as well as promoting cell proliferation duration in the earlier stages of the crops. In the present study, 62 TaPLATZ genes were identified from the wheat genome, and they were unequally distributed on 15 chromosomes. According to the phylogenetic analysis, 62 TaPLATZ genes were classified into six groups, including two groups that were unique in wheat. Members in the same groups shared similar exon-intron structures. The polyploidization, together with genome duplication of wheat, plays a crucial role in the expansion of the TaPLATZs family. Transcriptome data indicated a distinct divergence expression pattern of TaPLATZ genes that could be clustered into four modules. The TaPLATZs in Module b possessed a seed-specific expression pattern and displayed obvious high expression in the earlier development stage of seeds. Subcellular localization data of TaPLATZs suggesting that they likely perform a function as a conventional transcription factor. This study provides insight into understanding the structure divergence, evolutionary features, expression profiles, and potential function of PLATZ in wheat. MDPI 2020-11-25 /pmc/articles/PMC7728089/ /pubmed/33255649 http://dx.doi.org/10.3390/ijms21238934 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Fu, Yuxin
Cheng, Mengping
Li, Maolian
Guo, Xiaojiang
Wu, Yongrui
Wang, Jirui
Identification and Characterization of PLATZ Transcription Factors in Wheat
title Identification and Characterization of PLATZ Transcription Factors in Wheat
title_full Identification and Characterization of PLATZ Transcription Factors in Wheat
title_fullStr Identification and Characterization of PLATZ Transcription Factors in Wheat
title_full_unstemmed Identification and Characterization of PLATZ Transcription Factors in Wheat
title_short Identification and Characterization of PLATZ Transcription Factors in Wheat
title_sort identification and characterization of platz transcription factors in wheat
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7728089/
https://www.ncbi.nlm.nih.gov/pubmed/33255649
http://dx.doi.org/10.3390/ijms21238934
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AT wuyongrui identificationandcharacterizationofplatztranscriptionfactorsinwheat
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