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Comprehensive nutrient analysis in agricultural organic amendments through non-destructive assays using machine learning

Portable X-ray fluorescence (pXRF) and Diffuse Reflectance Fourier Transformed Mid-Infrared (DRIFT-MIR) spectroscopy are rapid and cost-effective analytical tools for material characterization. Here, we provide an assessment of these methods for the analysis of total Carbon, Nitrogen and total eleme...

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Autores principales: Towett, Erick K., Drake, Lee B., Acquah, Gifty E., Haefele, Stephan M., McGrath, Steve P., Shepherd, Keith D.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7728284/
https://www.ncbi.nlm.nih.gov/pubmed/33301449
http://dx.doi.org/10.1371/journal.pone.0242821
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author Towett, Erick K.
Drake, Lee B.
Acquah, Gifty E.
Haefele, Stephan M.
McGrath, Steve P.
Shepherd, Keith D.
author_facet Towett, Erick K.
Drake, Lee B.
Acquah, Gifty E.
Haefele, Stephan M.
McGrath, Steve P.
Shepherd, Keith D.
author_sort Towett, Erick K.
collection PubMed
description Portable X-ray fluorescence (pXRF) and Diffuse Reflectance Fourier Transformed Mid-Infrared (DRIFT-MIR) spectroscopy are rapid and cost-effective analytical tools for material characterization. Here, we provide an assessment of these methods for the analysis of total Carbon, Nitrogen and total elemental composition of multiple elements in organic amendments. We developed machine learning methods to rapidly quantify the concentrations of macro- and micronutrient elements present in the samples and propose a novel system for the quality assessment of organic amendments. Two types of machine learning methods, forest regression and extreme gradient boosting, were used with data from both pXRF and DRIFT-MIR spectroscopy. Cross-validation trials were run to evaluate generalizability of models produced on each instrument. Both methods demonstrated similar broad capabilities in estimating nutrients using machine learning, with pXRF being suitable for nutrients and contaminants. The results make portable spectrometry in combination with machine learning a scalable solution to provide comprehensive nutrient analysis for organic amendments.
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spelling pubmed-77282842020-12-17 Comprehensive nutrient analysis in agricultural organic amendments through non-destructive assays using machine learning Towett, Erick K. Drake, Lee B. Acquah, Gifty E. Haefele, Stephan M. McGrath, Steve P. Shepherd, Keith D. PLoS One Research Article Portable X-ray fluorescence (pXRF) and Diffuse Reflectance Fourier Transformed Mid-Infrared (DRIFT-MIR) spectroscopy are rapid and cost-effective analytical tools for material characterization. Here, we provide an assessment of these methods for the analysis of total Carbon, Nitrogen and total elemental composition of multiple elements in organic amendments. We developed machine learning methods to rapidly quantify the concentrations of macro- and micronutrient elements present in the samples and propose a novel system for the quality assessment of organic amendments. Two types of machine learning methods, forest regression and extreme gradient boosting, were used with data from both pXRF and DRIFT-MIR spectroscopy. Cross-validation trials were run to evaluate generalizability of models produced on each instrument. Both methods demonstrated similar broad capabilities in estimating nutrients using machine learning, with pXRF being suitable for nutrients and contaminants. The results make portable spectrometry in combination with machine learning a scalable solution to provide comprehensive nutrient analysis for organic amendments. Public Library of Science 2020-12-10 /pmc/articles/PMC7728284/ /pubmed/33301449 http://dx.doi.org/10.1371/journal.pone.0242821 Text en © 2020 Towett et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Towett, Erick K.
Drake, Lee B.
Acquah, Gifty E.
Haefele, Stephan M.
McGrath, Steve P.
Shepherd, Keith D.
Comprehensive nutrient analysis in agricultural organic amendments through non-destructive assays using machine learning
title Comprehensive nutrient analysis in agricultural organic amendments through non-destructive assays using machine learning
title_full Comprehensive nutrient analysis in agricultural organic amendments through non-destructive assays using machine learning
title_fullStr Comprehensive nutrient analysis in agricultural organic amendments through non-destructive assays using machine learning
title_full_unstemmed Comprehensive nutrient analysis in agricultural organic amendments through non-destructive assays using machine learning
title_short Comprehensive nutrient analysis in agricultural organic amendments through non-destructive assays using machine learning
title_sort comprehensive nutrient analysis in agricultural organic amendments through non-destructive assays using machine learning
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7728284/
https://www.ncbi.nlm.nih.gov/pubmed/33301449
http://dx.doi.org/10.1371/journal.pone.0242821
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