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Beyond R(0): heterogeneity in secondary infections and probabilistic epidemic forecasting

The basic reproductive number, R(0), is one of the most common and most commonly misapplied numbers in public health. Often used to compare outbreaks and forecast pandemic risk, this single number belies the complexity that different epidemics can exhibit, even when they have the same R(0). Here, we...

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Autores principales: Hébert-Dufresne, Laurent, Althouse, Benjamin M., Scarpino, Samuel V., Allard, Antoine
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Royal Society 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7729039/
https://www.ncbi.nlm.nih.gov/pubmed/33143594
http://dx.doi.org/10.1098/rsif.2020.0393
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author Hébert-Dufresne, Laurent
Althouse, Benjamin M.
Scarpino, Samuel V.
Allard, Antoine
author_facet Hébert-Dufresne, Laurent
Althouse, Benjamin M.
Scarpino, Samuel V.
Allard, Antoine
author_sort Hébert-Dufresne, Laurent
collection PubMed
description The basic reproductive number, R(0), is one of the most common and most commonly misapplied numbers in public health. Often used to compare outbreaks and forecast pandemic risk, this single number belies the complexity that different epidemics can exhibit, even when they have the same R(0). Here, we reformulate and extend a classic result from random network theory to forecast the size of an epidemic using estimates of the distribution of secondary infections, leveraging both its average R(0) and the underlying heterogeneity. Importantly, epidemics with lower R(0) can be larger if they spread more homogeneously (and are therefore more robust to stochastic fluctuations). We illustrate the potential of this approach using different real epidemics with known estimates for R(0), heterogeneity and epidemic size in the absence of significant intervention. Further, we discuss the different ways in which this framework can be implemented in the data-scarce reality of emerging pathogens. Lastly, we demonstrate that without data on the heterogeneity in secondary infections for emerging infectious diseases like COVID-19 the uncertainty in outbreak size ranges dramatically. Taken together, our work highlights the critical need for contact tracing during emerging infectious disease outbreaks and the need to look beyond R(0).
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spelling pubmed-77290392020-12-22 Beyond R(0): heterogeneity in secondary infections and probabilistic epidemic forecasting Hébert-Dufresne, Laurent Althouse, Benjamin M. Scarpino, Samuel V. Allard, Antoine J R Soc Interface Life Sciences–Mathematics interface The basic reproductive number, R(0), is one of the most common and most commonly misapplied numbers in public health. Often used to compare outbreaks and forecast pandemic risk, this single number belies the complexity that different epidemics can exhibit, even when they have the same R(0). Here, we reformulate and extend a classic result from random network theory to forecast the size of an epidemic using estimates of the distribution of secondary infections, leveraging both its average R(0) and the underlying heterogeneity. Importantly, epidemics with lower R(0) can be larger if they spread more homogeneously (and are therefore more robust to stochastic fluctuations). We illustrate the potential of this approach using different real epidemics with known estimates for R(0), heterogeneity and epidemic size in the absence of significant intervention. Further, we discuss the different ways in which this framework can be implemented in the data-scarce reality of emerging pathogens. Lastly, we demonstrate that without data on the heterogeneity in secondary infections for emerging infectious diseases like COVID-19 the uncertainty in outbreak size ranges dramatically. Taken together, our work highlights the critical need for contact tracing during emerging infectious disease outbreaks and the need to look beyond R(0). The Royal Society 2020-11 2020-11-04 /pmc/articles/PMC7729039/ /pubmed/33143594 http://dx.doi.org/10.1098/rsif.2020.0393 Text en © 2020 The Authors. http://creativecommons.org/licenses/by/4.0/ http://creativecommons.org/licenses/by/4.0/http://creativecommons.org/licenses/by/4.0/Published by the Royal Society under the terms of the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/, which permits unrestricted use, provided the original author and source are credited.
spellingShingle Life Sciences–Mathematics interface
Hébert-Dufresne, Laurent
Althouse, Benjamin M.
Scarpino, Samuel V.
Allard, Antoine
Beyond R(0): heterogeneity in secondary infections and probabilistic epidemic forecasting
title Beyond R(0): heterogeneity in secondary infections and probabilistic epidemic forecasting
title_full Beyond R(0): heterogeneity in secondary infections and probabilistic epidemic forecasting
title_fullStr Beyond R(0): heterogeneity in secondary infections and probabilistic epidemic forecasting
title_full_unstemmed Beyond R(0): heterogeneity in secondary infections and probabilistic epidemic forecasting
title_short Beyond R(0): heterogeneity in secondary infections and probabilistic epidemic forecasting
title_sort beyond r(0): heterogeneity in secondary infections and probabilistic epidemic forecasting
topic Life Sciences–Mathematics interface
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7729039/
https://www.ncbi.nlm.nih.gov/pubmed/33143594
http://dx.doi.org/10.1098/rsif.2020.0393
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