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A Chromosome-Level Genome Assembly of the Anglerfish Lophius litulon

Anglerfishes are a highly diverse group of species with unique characteristics. Here, we report the first chromosome-level genome of a species in the order Lophiiformes, the yellow goosefish (Lophius litulon), obtained by whole genome shotgun sequencing and high-throughput chromatin conformation cap...

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Autores principales: Lv, Meiqi, Zhang, Yaolei, Liu, Kaiqiang, Li, Chang, Wang, Jiahao, Fan, Guangyi, Liu, Xin, Yang, Huanming, Liu, Changlin, Mahboob, Shahid, Liu, Junnian, Shao, Changwei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7729161/
https://www.ncbi.nlm.nih.gov/pubmed/33329719
http://dx.doi.org/10.3389/fgene.2020.581161
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author Lv, Meiqi
Zhang, Yaolei
Liu, Kaiqiang
Li, Chang
Wang, Jiahao
Fan, Guangyi
Liu, Xin
Yang, Huanming
Liu, Changlin
Mahboob, Shahid
Liu, Junnian
Shao, Changwei
author_facet Lv, Meiqi
Zhang, Yaolei
Liu, Kaiqiang
Li, Chang
Wang, Jiahao
Fan, Guangyi
Liu, Xin
Yang, Huanming
Liu, Changlin
Mahboob, Shahid
Liu, Junnian
Shao, Changwei
author_sort Lv, Meiqi
collection PubMed
description Anglerfishes are a highly diverse group of species with unique characteristics. Here, we report the first chromosome-level genome of a species in the order Lophiiformes, the yellow goosefish (Lophius litulon), obtained by whole genome shotgun sequencing and high-throughput chromatin conformation capture. Approximately 97.20% of the assembly spanning 709.23 Mb could be anchored to 23 chromosomes with a contig N50 of 164.91 kb. The BUSCO value was 95.4%, suggesting that the quality of the assembly was high. A comparative gene family analysis identified expanded and contracted gene families, and these may be associated with adaptation to the benthic environment and the lack of scales in the species. A majority of positively selected genes were related to metabolic processes, suggesting that digestive and metabolic system evolution expanded the diversity of yellow goosefish prey. Our study provides a valuable genetic resource for understanding the mechanisms underlying the unique features of the yellow goosefish and for investigating anglerfish evolution.
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spelling pubmed-77291612020-12-15 A Chromosome-Level Genome Assembly of the Anglerfish Lophius litulon Lv, Meiqi Zhang, Yaolei Liu, Kaiqiang Li, Chang Wang, Jiahao Fan, Guangyi Liu, Xin Yang, Huanming Liu, Changlin Mahboob, Shahid Liu, Junnian Shao, Changwei Front Genet Genetics Anglerfishes are a highly diverse group of species with unique characteristics. Here, we report the first chromosome-level genome of a species in the order Lophiiformes, the yellow goosefish (Lophius litulon), obtained by whole genome shotgun sequencing and high-throughput chromatin conformation capture. Approximately 97.20% of the assembly spanning 709.23 Mb could be anchored to 23 chromosomes with a contig N50 of 164.91 kb. The BUSCO value was 95.4%, suggesting that the quality of the assembly was high. A comparative gene family analysis identified expanded and contracted gene families, and these may be associated with adaptation to the benthic environment and the lack of scales in the species. A majority of positively selected genes were related to metabolic processes, suggesting that digestive and metabolic system evolution expanded the diversity of yellow goosefish prey. Our study provides a valuable genetic resource for understanding the mechanisms underlying the unique features of the yellow goosefish and for investigating anglerfish evolution. Frontiers Media S.A. 2020-11-27 /pmc/articles/PMC7729161/ /pubmed/33329719 http://dx.doi.org/10.3389/fgene.2020.581161 Text en Copyright © 2020 Lv, Zhang, Liu, Li, Wang, Fan, Liu, Yang, Liu, Mahboob, Liu and Shao. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Genetics
Lv, Meiqi
Zhang, Yaolei
Liu, Kaiqiang
Li, Chang
Wang, Jiahao
Fan, Guangyi
Liu, Xin
Yang, Huanming
Liu, Changlin
Mahboob, Shahid
Liu, Junnian
Shao, Changwei
A Chromosome-Level Genome Assembly of the Anglerfish Lophius litulon
title A Chromosome-Level Genome Assembly of the Anglerfish Lophius litulon
title_full A Chromosome-Level Genome Assembly of the Anglerfish Lophius litulon
title_fullStr A Chromosome-Level Genome Assembly of the Anglerfish Lophius litulon
title_full_unstemmed A Chromosome-Level Genome Assembly of the Anglerfish Lophius litulon
title_short A Chromosome-Level Genome Assembly of the Anglerfish Lophius litulon
title_sort chromosome-level genome assembly of the anglerfish lophius litulon
topic Genetics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7729161/
https://www.ncbi.nlm.nih.gov/pubmed/33329719
http://dx.doi.org/10.3389/fgene.2020.581161
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