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A Chromosome-Level Genome Assembly of the Anglerfish Lophius litulon
Anglerfishes are a highly diverse group of species with unique characteristics. Here, we report the first chromosome-level genome of a species in the order Lophiiformes, the yellow goosefish (Lophius litulon), obtained by whole genome shotgun sequencing and high-throughput chromatin conformation cap...
Autores principales: | , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Frontiers Media S.A.
2020
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7729161/ https://www.ncbi.nlm.nih.gov/pubmed/33329719 http://dx.doi.org/10.3389/fgene.2020.581161 |
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author | Lv, Meiqi Zhang, Yaolei Liu, Kaiqiang Li, Chang Wang, Jiahao Fan, Guangyi Liu, Xin Yang, Huanming Liu, Changlin Mahboob, Shahid Liu, Junnian Shao, Changwei |
author_facet | Lv, Meiqi Zhang, Yaolei Liu, Kaiqiang Li, Chang Wang, Jiahao Fan, Guangyi Liu, Xin Yang, Huanming Liu, Changlin Mahboob, Shahid Liu, Junnian Shao, Changwei |
author_sort | Lv, Meiqi |
collection | PubMed |
description | Anglerfishes are a highly diverse group of species with unique characteristics. Here, we report the first chromosome-level genome of a species in the order Lophiiformes, the yellow goosefish (Lophius litulon), obtained by whole genome shotgun sequencing and high-throughput chromatin conformation capture. Approximately 97.20% of the assembly spanning 709.23 Mb could be anchored to 23 chromosomes with a contig N50 of 164.91 kb. The BUSCO value was 95.4%, suggesting that the quality of the assembly was high. A comparative gene family analysis identified expanded and contracted gene families, and these may be associated with adaptation to the benthic environment and the lack of scales in the species. A majority of positively selected genes were related to metabolic processes, suggesting that digestive and metabolic system evolution expanded the diversity of yellow goosefish prey. Our study provides a valuable genetic resource for understanding the mechanisms underlying the unique features of the yellow goosefish and for investigating anglerfish evolution. |
format | Online Article Text |
id | pubmed-7729161 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-77291612020-12-15 A Chromosome-Level Genome Assembly of the Anglerfish Lophius litulon Lv, Meiqi Zhang, Yaolei Liu, Kaiqiang Li, Chang Wang, Jiahao Fan, Guangyi Liu, Xin Yang, Huanming Liu, Changlin Mahboob, Shahid Liu, Junnian Shao, Changwei Front Genet Genetics Anglerfishes are a highly diverse group of species with unique characteristics. Here, we report the first chromosome-level genome of a species in the order Lophiiformes, the yellow goosefish (Lophius litulon), obtained by whole genome shotgun sequencing and high-throughput chromatin conformation capture. Approximately 97.20% of the assembly spanning 709.23 Mb could be anchored to 23 chromosomes with a contig N50 of 164.91 kb. The BUSCO value was 95.4%, suggesting that the quality of the assembly was high. A comparative gene family analysis identified expanded and contracted gene families, and these may be associated with adaptation to the benthic environment and the lack of scales in the species. A majority of positively selected genes were related to metabolic processes, suggesting that digestive and metabolic system evolution expanded the diversity of yellow goosefish prey. Our study provides a valuable genetic resource for understanding the mechanisms underlying the unique features of the yellow goosefish and for investigating anglerfish evolution. Frontiers Media S.A. 2020-11-27 /pmc/articles/PMC7729161/ /pubmed/33329719 http://dx.doi.org/10.3389/fgene.2020.581161 Text en Copyright © 2020 Lv, Zhang, Liu, Li, Wang, Fan, Liu, Yang, Liu, Mahboob, Liu and Shao. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Genetics Lv, Meiqi Zhang, Yaolei Liu, Kaiqiang Li, Chang Wang, Jiahao Fan, Guangyi Liu, Xin Yang, Huanming Liu, Changlin Mahboob, Shahid Liu, Junnian Shao, Changwei A Chromosome-Level Genome Assembly of the Anglerfish Lophius litulon |
title | A Chromosome-Level Genome Assembly of the Anglerfish Lophius litulon |
title_full | A Chromosome-Level Genome Assembly of the Anglerfish Lophius litulon |
title_fullStr | A Chromosome-Level Genome Assembly of the Anglerfish Lophius litulon |
title_full_unstemmed | A Chromosome-Level Genome Assembly of the Anglerfish Lophius litulon |
title_short | A Chromosome-Level Genome Assembly of the Anglerfish Lophius litulon |
title_sort | chromosome-level genome assembly of the anglerfish lophius litulon |
topic | Genetics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7729161/ https://www.ncbi.nlm.nih.gov/pubmed/33329719 http://dx.doi.org/10.3389/fgene.2020.581161 |
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