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Survival Prediction in Gallbladder Cancer Using CT Based Machine Learning
OBJECTIVE: To establish a classifier for accurately predicting the overall survival of gallbladder cancer (GBC) patients by analyzing pre-treatment CT images using machine learning technology. METHODS: This retrospective study included 141 patients with pathologically confirmed GBC. After obtaining...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7729190/ https://www.ncbi.nlm.nih.gov/pubmed/33330105 http://dx.doi.org/10.3389/fonc.2020.604288 |
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author | Liu, Zefan Zhu, Guannan Jiang, Xian Zhao, Yunuo Zeng, Hao Jing, Jing Ma, Xuelei |
author_facet | Liu, Zefan Zhu, Guannan Jiang, Xian Zhao, Yunuo Zeng, Hao Jing, Jing Ma, Xuelei |
author_sort | Liu, Zefan |
collection | PubMed |
description | OBJECTIVE: To establish a classifier for accurately predicting the overall survival of gallbladder cancer (GBC) patients by analyzing pre-treatment CT images using machine learning technology. METHODS: This retrospective study included 141 patients with pathologically confirmed GBC. After obtaining the pre-treatment CT images, manual segmentation of the tumor lesion was performed and LIFEx package was used to extract the tumor signature. Next, LASSO and Random Forest methods were used to optimize and model. Finally, the clinical information was combined to accurately predict the survival outcomes of GBC patients. RESULTS: Fifteen CT features were selected through LASSO and random forest. On the basis of relative importance GLZLM-HGZE, GLCM-homogeneity and NGLDM-coarseness were included in the final model. The hazard ratio of the CT-based model was 1.462(95% CI: 1.014–2.107). According to the median of risk score, all patients were divided into high and low risk groups, and survival analysis showed that high-risk groups had a poor survival outcome (P = 0.012). After inclusion of clinical factors, we used multivariate COX to classify patients with GBC. The AUC values in the test set and validation set for 3 years reached 0.79 and 0.73, respectively. CONCLUSION: GBC survival outcomes could be predicted by radiomics based on LASSO and Random Forest. |
format | Online Article Text |
id | pubmed-7729190 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-77291902020-12-15 Survival Prediction in Gallbladder Cancer Using CT Based Machine Learning Liu, Zefan Zhu, Guannan Jiang, Xian Zhao, Yunuo Zeng, Hao Jing, Jing Ma, Xuelei Front Oncol Oncology OBJECTIVE: To establish a classifier for accurately predicting the overall survival of gallbladder cancer (GBC) patients by analyzing pre-treatment CT images using machine learning technology. METHODS: This retrospective study included 141 patients with pathologically confirmed GBC. After obtaining the pre-treatment CT images, manual segmentation of the tumor lesion was performed and LIFEx package was used to extract the tumor signature. Next, LASSO and Random Forest methods were used to optimize and model. Finally, the clinical information was combined to accurately predict the survival outcomes of GBC patients. RESULTS: Fifteen CT features were selected through LASSO and random forest. On the basis of relative importance GLZLM-HGZE, GLCM-homogeneity and NGLDM-coarseness were included in the final model. The hazard ratio of the CT-based model was 1.462(95% CI: 1.014–2.107). According to the median of risk score, all patients were divided into high and low risk groups, and survival analysis showed that high-risk groups had a poor survival outcome (P = 0.012). After inclusion of clinical factors, we used multivariate COX to classify patients with GBC. The AUC values in the test set and validation set for 3 years reached 0.79 and 0.73, respectively. CONCLUSION: GBC survival outcomes could be predicted by radiomics based on LASSO and Random Forest. Frontiers Media S.A. 2020-11-27 /pmc/articles/PMC7729190/ /pubmed/33330105 http://dx.doi.org/10.3389/fonc.2020.604288 Text en Copyright © 2020 Liu, Zhu, Jiang, Zhao, Zeng, Jing and Ma http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Oncology Liu, Zefan Zhu, Guannan Jiang, Xian Zhao, Yunuo Zeng, Hao Jing, Jing Ma, Xuelei Survival Prediction in Gallbladder Cancer Using CT Based Machine Learning |
title | Survival Prediction in Gallbladder Cancer Using CT Based Machine Learning |
title_full | Survival Prediction in Gallbladder Cancer Using CT Based Machine Learning |
title_fullStr | Survival Prediction in Gallbladder Cancer Using CT Based Machine Learning |
title_full_unstemmed | Survival Prediction in Gallbladder Cancer Using CT Based Machine Learning |
title_short | Survival Prediction in Gallbladder Cancer Using CT Based Machine Learning |
title_sort | survival prediction in gallbladder cancer using ct based machine learning |
topic | Oncology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7729190/ https://www.ncbi.nlm.nih.gov/pubmed/33330105 http://dx.doi.org/10.3389/fonc.2020.604288 |
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