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Development and Validation of a Novel 11-Gene Prognostic Model for Serous Ovarian Carcinomas Based on Lipid Metabolism Expression Profile
(1) Background: Biomarkers might play a significant role in predicting the clinical outcomes of patients with ovarian cancer. By analyzing lipid metabolism genes, future perspectives may be uncovered; (2) Methods: RNA-seq data for serous ovarian cancer were downloaded from The Cancer Genome Atlas an...
Autores principales: | , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7731240/ https://www.ncbi.nlm.nih.gov/pubmed/33271935 http://dx.doi.org/10.3390/ijms21239169 |
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author | Zheng, Mingjun Mullikin, Heather Hester, Anna Czogalla, Bastian Heidegger, Helene Vilsmaier, Theresa Vattai, Aurelia Chelariu-Raicu, Anca Jeschke, Udo Trillsch, Fabian Mahner, Sven Kaltofen, Till |
author_facet | Zheng, Mingjun Mullikin, Heather Hester, Anna Czogalla, Bastian Heidegger, Helene Vilsmaier, Theresa Vattai, Aurelia Chelariu-Raicu, Anca Jeschke, Udo Trillsch, Fabian Mahner, Sven Kaltofen, Till |
author_sort | Zheng, Mingjun |
collection | PubMed |
description | (1) Background: Biomarkers might play a significant role in predicting the clinical outcomes of patients with ovarian cancer. By analyzing lipid metabolism genes, future perspectives may be uncovered; (2) Methods: RNA-seq data for serous ovarian cancer were downloaded from The Cancer Genome Atlas and Gene Expression Omnibus databases. The non-negative matrix factorization package in programming language R was used to classify molecular subtypes of lipid metabolism genes and the limma package in R was performed for functional enrichment analysis. Through lasso regression, we constructed a multi-gene prognosis model; (3) Results: Two molecular subtypes were obtained and an 11-gene signature was constructed (PI3, RGS, ADORA3, CH25H, CCDC80, PTGER3, MATK, KLRB1, CCL19, CXCL9 and CXCL10). Our prognostic model shows a good independent prognostic ability in ovarian cancer. In a nomogram, the predictive efficiency was notably superior to that of traditional clinical features. Related to known models in ovarian cancer with a comparable amount of genes, ours has the highest concordance index; (4) Conclusions: We propose an 11-gene signature prognosis prediction model based on lipid metabolism genes in serous ovarian cancer. |
format | Online Article Text |
id | pubmed-7731240 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-77312402020-12-12 Development and Validation of a Novel 11-Gene Prognostic Model for Serous Ovarian Carcinomas Based on Lipid Metabolism Expression Profile Zheng, Mingjun Mullikin, Heather Hester, Anna Czogalla, Bastian Heidegger, Helene Vilsmaier, Theresa Vattai, Aurelia Chelariu-Raicu, Anca Jeschke, Udo Trillsch, Fabian Mahner, Sven Kaltofen, Till Int J Mol Sci Article (1) Background: Biomarkers might play a significant role in predicting the clinical outcomes of patients with ovarian cancer. By analyzing lipid metabolism genes, future perspectives may be uncovered; (2) Methods: RNA-seq data for serous ovarian cancer were downloaded from The Cancer Genome Atlas and Gene Expression Omnibus databases. The non-negative matrix factorization package in programming language R was used to classify molecular subtypes of lipid metabolism genes and the limma package in R was performed for functional enrichment analysis. Through lasso regression, we constructed a multi-gene prognosis model; (3) Results: Two molecular subtypes were obtained and an 11-gene signature was constructed (PI3, RGS, ADORA3, CH25H, CCDC80, PTGER3, MATK, KLRB1, CCL19, CXCL9 and CXCL10). Our prognostic model shows a good independent prognostic ability in ovarian cancer. In a nomogram, the predictive efficiency was notably superior to that of traditional clinical features. Related to known models in ovarian cancer with a comparable amount of genes, ours has the highest concordance index; (4) Conclusions: We propose an 11-gene signature prognosis prediction model based on lipid metabolism genes in serous ovarian cancer. MDPI 2020-12-01 /pmc/articles/PMC7731240/ /pubmed/33271935 http://dx.doi.org/10.3390/ijms21239169 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Zheng, Mingjun Mullikin, Heather Hester, Anna Czogalla, Bastian Heidegger, Helene Vilsmaier, Theresa Vattai, Aurelia Chelariu-Raicu, Anca Jeschke, Udo Trillsch, Fabian Mahner, Sven Kaltofen, Till Development and Validation of a Novel 11-Gene Prognostic Model for Serous Ovarian Carcinomas Based on Lipid Metabolism Expression Profile |
title | Development and Validation of a Novel 11-Gene Prognostic Model for Serous Ovarian Carcinomas Based on Lipid Metabolism Expression Profile |
title_full | Development and Validation of a Novel 11-Gene Prognostic Model for Serous Ovarian Carcinomas Based on Lipid Metabolism Expression Profile |
title_fullStr | Development and Validation of a Novel 11-Gene Prognostic Model for Serous Ovarian Carcinomas Based on Lipid Metabolism Expression Profile |
title_full_unstemmed | Development and Validation of a Novel 11-Gene Prognostic Model for Serous Ovarian Carcinomas Based on Lipid Metabolism Expression Profile |
title_short | Development and Validation of a Novel 11-Gene Prognostic Model for Serous Ovarian Carcinomas Based on Lipid Metabolism Expression Profile |
title_sort | development and validation of a novel 11-gene prognostic model for serous ovarian carcinomas based on lipid metabolism expression profile |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7731240/ https://www.ncbi.nlm.nih.gov/pubmed/33271935 http://dx.doi.org/10.3390/ijms21239169 |
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