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CamRegBase: a gene regulation database for the biofuel crop, Camelina sativa
Camelina is an annual oilseed plant from the Brassicaceae family that is gaining momentum as a biofuel winter cover crop. However, a significant limitation in further enhancing its utility as a producer of oils that can be used as biofuels, jet fuels or bio-based products is the absence of a reposit...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7731927/ https://www.ncbi.nlm.nih.gov/pubmed/33306801 http://dx.doi.org/10.1093/database/baaa075 |
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author | Gomez-Cano, Fabio Carey, Lisa Lucas, Kevin García Navarrete, Tatiana Mukundi, Eric Lundback, Steve Schnell, Danny Grotewold, Erich |
author_facet | Gomez-Cano, Fabio Carey, Lisa Lucas, Kevin García Navarrete, Tatiana Mukundi, Eric Lundback, Steve Schnell, Danny Grotewold, Erich |
author_sort | Gomez-Cano, Fabio |
collection | PubMed |
description | Camelina is an annual oilseed plant from the Brassicaceae family that is gaining momentum as a biofuel winter cover crop. However, a significant limitation in further enhancing its utility as a producer of oils that can be used as biofuels, jet fuels or bio-based products is the absence of a repository for all the gene expression and regulatory information that is being rapidly generated by the community. Here, we provide CamRegBase (https://camregbase.org/) as a one-stop resource to access Camelina information on gene expression and co-expression, transcription factors, lipid associated genes and genome-wide orthologs in the close-relative reference plant Arabidopsis. We envision this as a resource of curated information for users, as well as a repository of new gene regulation information. |
format | Online Article Text |
id | pubmed-7731927 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-77319272020-12-16 CamRegBase: a gene regulation database for the biofuel crop, Camelina sativa Gomez-Cano, Fabio Carey, Lisa Lucas, Kevin García Navarrete, Tatiana Mukundi, Eric Lundback, Steve Schnell, Danny Grotewold, Erich Database (Oxford) Original Article Camelina is an annual oilseed plant from the Brassicaceae family that is gaining momentum as a biofuel winter cover crop. However, a significant limitation in further enhancing its utility as a producer of oils that can be used as biofuels, jet fuels or bio-based products is the absence of a repository for all the gene expression and regulatory information that is being rapidly generated by the community. Here, we provide CamRegBase (https://camregbase.org/) as a one-stop resource to access Camelina information on gene expression and co-expression, transcription factors, lipid associated genes and genome-wide orthologs in the close-relative reference plant Arabidopsis. We envision this as a resource of curated information for users, as well as a repository of new gene regulation information. Oxford University Press 2020-12-11 /pmc/articles/PMC7731927/ /pubmed/33306801 http://dx.doi.org/10.1093/database/baaa075 Text en © The Author(s) 2020. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Original Article Gomez-Cano, Fabio Carey, Lisa Lucas, Kevin García Navarrete, Tatiana Mukundi, Eric Lundback, Steve Schnell, Danny Grotewold, Erich CamRegBase: a gene regulation database for the biofuel crop, Camelina sativa |
title | CamRegBase: a gene regulation database for the biofuel crop, Camelina sativa |
title_full | CamRegBase: a gene regulation database for the biofuel crop, Camelina sativa |
title_fullStr | CamRegBase: a gene regulation database for the biofuel crop, Camelina sativa |
title_full_unstemmed | CamRegBase: a gene regulation database for the biofuel crop, Camelina sativa |
title_short | CamRegBase: a gene regulation database for the biofuel crop, Camelina sativa |
title_sort | camregbase: a gene regulation database for the biofuel crop, camelina sativa |
topic | Original Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7731927/ https://www.ncbi.nlm.nih.gov/pubmed/33306801 http://dx.doi.org/10.1093/database/baaa075 |
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