Cargando…

CamRegBase: a gene regulation database for the biofuel crop, Camelina sativa

Camelina is an annual oilseed plant from the Brassicaceae family that is gaining momentum as a biofuel winter cover crop. However, a significant limitation in further enhancing its utility as a producer of oils that can be used as biofuels, jet fuels or bio-based products is the absence of a reposit...

Descripción completa

Detalles Bibliográficos
Autores principales: Gomez-Cano, Fabio, Carey, Lisa, Lucas, Kevin, García Navarrete, Tatiana, Mukundi, Eric, Lundback, Steve, Schnell, Danny, Grotewold, Erich
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7731927/
https://www.ncbi.nlm.nih.gov/pubmed/33306801
http://dx.doi.org/10.1093/database/baaa075
_version_ 1783621995485724672
author Gomez-Cano, Fabio
Carey, Lisa
Lucas, Kevin
García Navarrete, Tatiana
Mukundi, Eric
Lundback, Steve
Schnell, Danny
Grotewold, Erich
author_facet Gomez-Cano, Fabio
Carey, Lisa
Lucas, Kevin
García Navarrete, Tatiana
Mukundi, Eric
Lundback, Steve
Schnell, Danny
Grotewold, Erich
author_sort Gomez-Cano, Fabio
collection PubMed
description Camelina is an annual oilseed plant from the Brassicaceae family that is gaining momentum as a biofuel winter cover crop. However, a significant limitation in further enhancing its utility as a producer of oils that can be used as biofuels, jet fuels or bio-based products is the absence of a repository for all the gene expression and regulatory information that is being rapidly generated by the community. Here, we provide CamRegBase (https://camregbase.org/) as a one-stop resource to access Camelina information on gene expression and co-expression, transcription factors, lipid associated genes and genome-wide orthologs in the close-relative reference plant Arabidopsis. We envision this as a resource of curated information for users, as well as a repository of new gene regulation information.
format Online
Article
Text
id pubmed-7731927
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher Oxford University Press
record_format MEDLINE/PubMed
spelling pubmed-77319272020-12-16 CamRegBase: a gene regulation database for the biofuel crop, Camelina sativa Gomez-Cano, Fabio Carey, Lisa Lucas, Kevin García Navarrete, Tatiana Mukundi, Eric Lundback, Steve Schnell, Danny Grotewold, Erich Database (Oxford) Original Article Camelina is an annual oilseed plant from the Brassicaceae family that is gaining momentum as a biofuel winter cover crop. However, a significant limitation in further enhancing its utility as a producer of oils that can be used as biofuels, jet fuels or bio-based products is the absence of a repository for all the gene expression and regulatory information that is being rapidly generated by the community. Here, we provide CamRegBase (https://camregbase.org/) as a one-stop resource to access Camelina information on gene expression and co-expression, transcription factors, lipid associated genes and genome-wide orthologs in the close-relative reference plant Arabidopsis. We envision this as a resource of curated information for users, as well as a repository of new gene regulation information. Oxford University Press 2020-12-11 /pmc/articles/PMC7731927/ /pubmed/33306801 http://dx.doi.org/10.1093/database/baaa075 Text en © The Author(s) 2020. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Article
Gomez-Cano, Fabio
Carey, Lisa
Lucas, Kevin
García Navarrete, Tatiana
Mukundi, Eric
Lundback, Steve
Schnell, Danny
Grotewold, Erich
CamRegBase: a gene regulation database for the biofuel crop, Camelina sativa
title CamRegBase: a gene regulation database for the biofuel crop, Camelina sativa
title_full CamRegBase: a gene regulation database for the biofuel crop, Camelina sativa
title_fullStr CamRegBase: a gene regulation database for the biofuel crop, Camelina sativa
title_full_unstemmed CamRegBase: a gene regulation database for the biofuel crop, Camelina sativa
title_short CamRegBase: a gene regulation database for the biofuel crop, Camelina sativa
title_sort camregbase: a gene regulation database for the biofuel crop, camelina sativa
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7731927/
https://www.ncbi.nlm.nih.gov/pubmed/33306801
http://dx.doi.org/10.1093/database/baaa075
work_keys_str_mv AT gomezcanofabio camregbaseageneregulationdatabaseforthebiofuelcropcamelinasativa
AT careylisa camregbaseageneregulationdatabaseforthebiofuelcropcamelinasativa
AT lucaskevin camregbaseageneregulationdatabaseforthebiofuelcropcamelinasativa
AT garcianavarretetatiana camregbaseageneregulationdatabaseforthebiofuelcropcamelinasativa
AT mukundieric camregbaseageneregulationdatabaseforthebiofuelcropcamelinasativa
AT lundbacksteve camregbaseageneregulationdatabaseforthebiofuelcropcamelinasativa
AT schnelldanny camregbaseageneregulationdatabaseforthebiofuelcropcamelinasativa
AT grotewolderich camregbaseageneregulationdatabaseforthebiofuelcropcamelinasativa