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Development and validation of a survival model for thyroid carcinoma based on autophagy-associated genes

Abnormalities in autophagy-related genes (ARGs) are closely related to the occurrence and development of thyroid carcinoma (THCA). However, the effect of ARGs on the prognosis of THCA remains unclear. Here, by analyzing data from TCGA, 26 differentially expressed ARGs were screened. Cox regression a...

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Autores principales: Han, Baoai, Yang, Xiuping, Hosseini, Davood K., Luo, Pan, Liu, Mengzhi, Xu, Xiaoxiang, Zhang, Ya, Su, Hongguo, Zhou, Tao, Sun, Haiying, Chen, Xiong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Impact Journals 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7732287/
https://www.ncbi.nlm.nih.gov/pubmed/33055358
http://dx.doi.org/10.18632/aging.103715
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author Han, Baoai
Yang, Xiuping
Hosseini, Davood K.
Luo, Pan
Liu, Mengzhi
Xu, Xiaoxiang
Zhang, Ya
Su, Hongguo
Zhou, Tao
Sun, Haiying
Chen, Xiong
author_facet Han, Baoai
Yang, Xiuping
Hosseini, Davood K.
Luo, Pan
Liu, Mengzhi
Xu, Xiaoxiang
Zhang, Ya
Su, Hongguo
Zhou, Tao
Sun, Haiying
Chen, Xiong
author_sort Han, Baoai
collection PubMed
description Abnormalities in autophagy-related genes (ARGs) are closely related to the occurrence and development of thyroid carcinoma (THCA). However, the effect of ARGs on the prognosis of THCA remains unclear. Here, by analyzing data from TCGA, 26 differentially expressed ARGs were screened. Cox regression and Lasso regression were utilized to analyze the prognosis of the training group, and a risk model was constructed. Our results show that low-risk patients had better overall survival (OS) than high-risk patients, and the area under the ROC curve in the training and testing groups was significant (3-year AUC, 0.735 vs 0.796; 5-year AUC, 0.821 vs 0.804). In addition, a comprehensive analysis of the 5 identified ARGs demonstrated that most of them were related to OS in THCA patients, and two of them (CX3CL1 and CDKN2A) were differentially expressed in THCA and normal thyroid tissues at the protein level. GSEA suggested that the inactivation of the cell defense system and the activation of some classical tumor signaling pathways are important driving forces for the progression of THCA. This study demonstrated that the 5 ARGs in the survival model are promising multidimensional biomarkers for the diagnosis, prognosis, and treatment of THCA.
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spelling pubmed-77322872020-12-18 Development and validation of a survival model for thyroid carcinoma based on autophagy-associated genes Han, Baoai Yang, Xiuping Hosseini, Davood K. Luo, Pan Liu, Mengzhi Xu, Xiaoxiang Zhang, Ya Su, Hongguo Zhou, Tao Sun, Haiying Chen, Xiong Aging (Albany NY) Research Paper Abnormalities in autophagy-related genes (ARGs) are closely related to the occurrence and development of thyroid carcinoma (THCA). However, the effect of ARGs on the prognosis of THCA remains unclear. Here, by analyzing data from TCGA, 26 differentially expressed ARGs were screened. Cox regression and Lasso regression were utilized to analyze the prognosis of the training group, and a risk model was constructed. Our results show that low-risk patients had better overall survival (OS) than high-risk patients, and the area under the ROC curve in the training and testing groups was significant (3-year AUC, 0.735 vs 0.796; 5-year AUC, 0.821 vs 0.804). In addition, a comprehensive analysis of the 5 identified ARGs demonstrated that most of them were related to OS in THCA patients, and two of them (CX3CL1 and CDKN2A) were differentially expressed in THCA and normal thyroid tissues at the protein level. GSEA suggested that the inactivation of the cell defense system and the activation of some classical tumor signaling pathways are important driving forces for the progression of THCA. This study demonstrated that the 5 ARGs in the survival model are promising multidimensional biomarkers for the diagnosis, prognosis, and treatment of THCA. Impact Journals 2020-10-14 /pmc/articles/PMC7732287/ /pubmed/33055358 http://dx.doi.org/10.18632/aging.103715 Text en Copyright: © 2020 Han et al. https://creativecommons.org/licenses/by/3.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/3.0/) (CC BY 3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Paper
Han, Baoai
Yang, Xiuping
Hosseini, Davood K.
Luo, Pan
Liu, Mengzhi
Xu, Xiaoxiang
Zhang, Ya
Su, Hongguo
Zhou, Tao
Sun, Haiying
Chen, Xiong
Development and validation of a survival model for thyroid carcinoma based on autophagy-associated genes
title Development and validation of a survival model for thyroid carcinoma based on autophagy-associated genes
title_full Development and validation of a survival model for thyroid carcinoma based on autophagy-associated genes
title_fullStr Development and validation of a survival model for thyroid carcinoma based on autophagy-associated genes
title_full_unstemmed Development and validation of a survival model for thyroid carcinoma based on autophagy-associated genes
title_short Development and validation of a survival model for thyroid carcinoma based on autophagy-associated genes
title_sort development and validation of a survival model for thyroid carcinoma based on autophagy-associated genes
topic Research Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7732287/
https://www.ncbi.nlm.nih.gov/pubmed/33055358
http://dx.doi.org/10.18632/aging.103715
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