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Fully automated detection and segmentation of intracranial aneurysms in subarachnoid hemorrhage on CTA using deep learning

In aneurysmal subarachnoid hemorrhage (aSAH), accurate diagnosis of aneurysm is essential for subsequent treatment to prevent rebleeding. However, aneurysm detection proves to be challenging and time-consuming. The purpose of this study was to develop and evaluate a deep learning model (DLM) to auto...

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Autores principales: Shahzad, Rahil, Pennig, Lenhard, Goertz, Lukas, Thiele, Frank, Kabbasch, Christoph, Schlamann, Marc, Krischek, Boris, Maintz, David, Perkuhn, Michael, Borggrefe, Jan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7733480/
https://www.ncbi.nlm.nih.gov/pubmed/33311535
http://dx.doi.org/10.1038/s41598-020-78384-1
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author Shahzad, Rahil
Pennig, Lenhard
Goertz, Lukas
Thiele, Frank
Kabbasch, Christoph
Schlamann, Marc
Krischek, Boris
Maintz, David
Perkuhn, Michael
Borggrefe, Jan
author_facet Shahzad, Rahil
Pennig, Lenhard
Goertz, Lukas
Thiele, Frank
Kabbasch, Christoph
Schlamann, Marc
Krischek, Boris
Maintz, David
Perkuhn, Michael
Borggrefe, Jan
author_sort Shahzad, Rahil
collection PubMed
description In aneurysmal subarachnoid hemorrhage (aSAH), accurate diagnosis of aneurysm is essential for subsequent treatment to prevent rebleeding. However, aneurysm detection proves to be challenging and time-consuming. The purpose of this study was to develop and evaluate a deep learning model (DLM) to automatically detect and segment aneurysms in patients with aSAH on computed tomography angiography. In this retrospective single-center study, three different DLMs were trained on 68 patients with 79 aneurysms treated for aSAH (2016–2017) using five-fold-cross-validation. Their outputs were combined to a single DLM via ensemble-learning. The DLM was evaluated on an independent test set consisting of 185 patients with 215 aneurysms (2010–2015). Independent manual segmentations of aneurysms in a 3D voxel-wise manner by two readers (neurosurgeon, radiologist) provided the reference standard. For aneurysms > 30 mm(3) (mean diameter of ~ 4 mm) on the test set, the DLM provided a detection sensitivity of 87% with false positives (FPs)/scan of 0.42. Automatic segmentations achieved a median dice similarity coefficient (DSC) of 0.80 compared to the reference standard. Aneurysm location (anterior vs. posterior circulation; P = .07) and bleeding severity (Fisher grade ≤ 3 vs. 4; P = .33) did not impede detection sensitivity or segmentation performance. For aneurysms > 100 mm(3) (mean diameter of ~ 6 mm), a sensitivity of 96% with DSC of 0.87 and FPs/scan of 0.14 were obtained. In the present study, we demonstrate that the proposed DLM detects and segments aneurysms > 30 mm(3) in patients with aSAH with high sensitivity independent of cerebral circulation and bleeding severity while producing FP findings of less than one per scan. Hence, the DLM can potentially assist treating physicians in aSAH by providing automated detection and segmentations of aneurysms.
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spelling pubmed-77334802020-12-15 Fully automated detection and segmentation of intracranial aneurysms in subarachnoid hemorrhage on CTA using deep learning Shahzad, Rahil Pennig, Lenhard Goertz, Lukas Thiele, Frank Kabbasch, Christoph Schlamann, Marc Krischek, Boris Maintz, David Perkuhn, Michael Borggrefe, Jan Sci Rep Article In aneurysmal subarachnoid hemorrhage (aSAH), accurate diagnosis of aneurysm is essential for subsequent treatment to prevent rebleeding. However, aneurysm detection proves to be challenging and time-consuming. The purpose of this study was to develop and evaluate a deep learning model (DLM) to automatically detect and segment aneurysms in patients with aSAH on computed tomography angiography. In this retrospective single-center study, three different DLMs were trained on 68 patients with 79 aneurysms treated for aSAH (2016–2017) using five-fold-cross-validation. Their outputs were combined to a single DLM via ensemble-learning. The DLM was evaluated on an independent test set consisting of 185 patients with 215 aneurysms (2010–2015). Independent manual segmentations of aneurysms in a 3D voxel-wise manner by two readers (neurosurgeon, radiologist) provided the reference standard. For aneurysms > 30 mm(3) (mean diameter of ~ 4 mm) on the test set, the DLM provided a detection sensitivity of 87% with false positives (FPs)/scan of 0.42. Automatic segmentations achieved a median dice similarity coefficient (DSC) of 0.80 compared to the reference standard. Aneurysm location (anterior vs. posterior circulation; P = .07) and bleeding severity (Fisher grade ≤ 3 vs. 4; P = .33) did not impede detection sensitivity or segmentation performance. For aneurysms > 100 mm(3) (mean diameter of ~ 6 mm), a sensitivity of 96% with DSC of 0.87 and FPs/scan of 0.14 were obtained. In the present study, we demonstrate that the proposed DLM detects and segments aneurysms > 30 mm(3) in patients with aSAH with high sensitivity independent of cerebral circulation and bleeding severity while producing FP findings of less than one per scan. Hence, the DLM can potentially assist treating physicians in aSAH by providing automated detection and segmentations of aneurysms. Nature Publishing Group UK 2020-12-11 /pmc/articles/PMC7733480/ /pubmed/33311535 http://dx.doi.org/10.1038/s41598-020-78384-1 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Shahzad, Rahil
Pennig, Lenhard
Goertz, Lukas
Thiele, Frank
Kabbasch, Christoph
Schlamann, Marc
Krischek, Boris
Maintz, David
Perkuhn, Michael
Borggrefe, Jan
Fully automated detection and segmentation of intracranial aneurysms in subarachnoid hemorrhage on CTA using deep learning
title Fully automated detection and segmentation of intracranial aneurysms in subarachnoid hemorrhage on CTA using deep learning
title_full Fully automated detection and segmentation of intracranial aneurysms in subarachnoid hemorrhage on CTA using deep learning
title_fullStr Fully automated detection and segmentation of intracranial aneurysms in subarachnoid hemorrhage on CTA using deep learning
title_full_unstemmed Fully automated detection and segmentation of intracranial aneurysms in subarachnoid hemorrhage on CTA using deep learning
title_short Fully automated detection and segmentation of intracranial aneurysms in subarachnoid hemorrhage on CTA using deep learning
title_sort fully automated detection and segmentation of intracranial aneurysms in subarachnoid hemorrhage on cta using deep learning
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7733480/
https://www.ncbi.nlm.nih.gov/pubmed/33311535
http://dx.doi.org/10.1038/s41598-020-78384-1
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