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Local conformal autoencoder for standardized data coordinates
We propose a local conformal autoencoder (LOCA) for standardized data coordinates. LOCA is a deep learning-based method for obtaining standardized data coordinates from scientific measurements. Data observations are modeled as samples from an unknown, nonlinear deformation of an underlying Riemannia...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
National Academy of Sciences
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7733838/ https://www.ncbi.nlm.nih.gov/pubmed/33229581 http://dx.doi.org/10.1073/pnas.2014627117 |
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author | Peterfreund, Erez Lindenbaum, Ofir Dietrich, Felix Bertalan, Tom Gavish, Matan Kevrekidis, Ioannis G. Coifman, Ronald R. |
author_facet | Peterfreund, Erez Lindenbaum, Ofir Dietrich, Felix Bertalan, Tom Gavish, Matan Kevrekidis, Ioannis G. Coifman, Ronald R. |
author_sort | Peterfreund, Erez |
collection | PubMed |
description | We propose a local conformal autoencoder (LOCA) for standardized data coordinates. LOCA is a deep learning-based method for obtaining standardized data coordinates from scientific measurements. Data observations are modeled as samples from an unknown, nonlinear deformation of an underlying Riemannian manifold, which is parametrized by a few normalized, latent variables. We assume a repeated measurement sampling strategy, common in scientific measurements, and present a method for learning an embedding in [Formula: see text] that is isometric to the latent variables of the manifold. The coordinates recovered by our method are invariant to diffeomorphisms of the manifold, making it possible to match between different instrumental observations of the same phenomenon. Our embedding is obtained using LOCA, which is an algorithm that learns to rectify deformations by using a local z-scoring procedure, while preserving relevant geometric information. We demonstrate the isometric embedding properties of LOCA in various model settings and observe that it exhibits promising interpolation and extrapolation capabilities, superior to the current state of the art. Finally, we demonstrate LOCA’s efficacy in single-site Wi-Fi localization data and for the reconstruction of three-dimensional curved surfaces from two-dimensional projections. |
format | Online Article Text |
id | pubmed-7733838 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | National Academy of Sciences |
record_format | MEDLINE/PubMed |
spelling | pubmed-77338382020-12-21 Local conformal autoencoder for standardized data coordinates Peterfreund, Erez Lindenbaum, Ofir Dietrich, Felix Bertalan, Tom Gavish, Matan Kevrekidis, Ioannis G. Coifman, Ronald R. Proc Natl Acad Sci U S A Physical Sciences We propose a local conformal autoencoder (LOCA) for standardized data coordinates. LOCA is a deep learning-based method for obtaining standardized data coordinates from scientific measurements. Data observations are modeled as samples from an unknown, nonlinear deformation of an underlying Riemannian manifold, which is parametrized by a few normalized, latent variables. We assume a repeated measurement sampling strategy, common in scientific measurements, and present a method for learning an embedding in [Formula: see text] that is isometric to the latent variables of the manifold. The coordinates recovered by our method are invariant to diffeomorphisms of the manifold, making it possible to match between different instrumental observations of the same phenomenon. Our embedding is obtained using LOCA, which is an algorithm that learns to rectify deformations by using a local z-scoring procedure, while preserving relevant geometric information. We demonstrate the isometric embedding properties of LOCA in various model settings and observe that it exhibits promising interpolation and extrapolation capabilities, superior to the current state of the art. Finally, we demonstrate LOCA’s efficacy in single-site Wi-Fi localization data and for the reconstruction of three-dimensional curved surfaces from two-dimensional projections. National Academy of Sciences 2020-12-08 2020-11-23 /pmc/articles/PMC7733838/ /pubmed/33229581 http://dx.doi.org/10.1073/pnas.2014627117 Text en Copyright © 2020 the Author(s). Published by PNAS. https://creativecommons.org/licenses/by-nc-nd/4.0/ https://creativecommons.org/licenses/by-nc-nd/4.0/This open access article is distributed under Creative Commons Attribution-NonCommercial-NoDerivatives License 4.0 (CC BY-NC-ND) (https://creativecommons.org/licenses/by-nc-nd/4.0/) . |
spellingShingle | Physical Sciences Peterfreund, Erez Lindenbaum, Ofir Dietrich, Felix Bertalan, Tom Gavish, Matan Kevrekidis, Ioannis G. Coifman, Ronald R. Local conformal autoencoder for standardized data coordinates |
title | Local conformal autoencoder for standardized data coordinates |
title_full | Local conformal autoencoder for standardized data coordinates |
title_fullStr | Local conformal autoencoder for standardized data coordinates |
title_full_unstemmed | Local conformal autoencoder for standardized data coordinates |
title_short | Local conformal autoencoder for standardized data coordinates |
title_sort | local conformal autoencoder for standardized data coordinates |
topic | Physical Sciences |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7733838/ https://www.ncbi.nlm.nih.gov/pubmed/33229581 http://dx.doi.org/10.1073/pnas.2014627117 |
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