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Flora Capture: a citizen science application for collecting structured plant observations

BACKGROUND: Digital plant images are becoming increasingly important. First, given a large number of images deep learning algorithms can be trained to automatically identify plants. Second, structured image-based observations provide information about plant morphological characteristics. Finally in...

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Autores principales: Boho, David, Rzanny, Michael, Wäldchen, Jana, Nitsche, Fabian, Deggelmann, Alice, Wittich, Hans Christian, Seeland, Marco, Mäder, Patrick
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7734824/
https://www.ncbi.nlm.nih.gov/pubmed/33317442
http://dx.doi.org/10.1186/s12859-020-03920-9
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author Boho, David
Rzanny, Michael
Wäldchen, Jana
Nitsche, Fabian
Deggelmann, Alice
Wittich, Hans Christian
Seeland, Marco
Mäder, Patrick
author_facet Boho, David
Rzanny, Michael
Wäldchen, Jana
Nitsche, Fabian
Deggelmann, Alice
Wittich, Hans Christian
Seeland, Marco
Mäder, Patrick
author_sort Boho, David
collection PubMed
description BACKGROUND: Digital plant images are becoming increasingly important. First, given a large number of images deep learning algorithms can be trained to automatically identify plants. Second, structured image-based observations provide information about plant morphological characteristics. Finally in the course of digitalization, digital plant collections receive more and more interest in schools and universities. RESULTS: We developed a freely available mobile application called Flora Capture allowing users to collect series of plant images from predefined perspectives. These images, together with accompanying metadata, are transferred to a central project server where each observation is reviewed and validated by a team of botanical experts. Currently, more than 4800 plant species, naturally occurring in the Central European region, are covered by the application. More than 200,000 images, depicting more than 1700 plant species, have been collected by thousands of users since the initial app release in 2016. CONCLUSION: Flora Capture allows experts, laymen and citizen scientists to collect a digital herbarium and share structured multi-modal observations of plants. Collected images contribute, e.g., to the training of plant identification algorithms, but also suit educational purposes. Additionally, presence records collected with each observation allow contribute to verifiable records of plant occurrences across the world.
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spelling pubmed-77348242020-12-15 Flora Capture: a citizen science application for collecting structured plant observations Boho, David Rzanny, Michael Wäldchen, Jana Nitsche, Fabian Deggelmann, Alice Wittich, Hans Christian Seeland, Marco Mäder, Patrick BMC Bioinformatics Software BACKGROUND: Digital plant images are becoming increasingly important. First, given a large number of images deep learning algorithms can be trained to automatically identify plants. Second, structured image-based observations provide information about plant morphological characteristics. Finally in the course of digitalization, digital plant collections receive more and more interest in schools and universities. RESULTS: We developed a freely available mobile application called Flora Capture allowing users to collect series of plant images from predefined perspectives. These images, together with accompanying metadata, are transferred to a central project server where each observation is reviewed and validated by a team of botanical experts. Currently, more than 4800 plant species, naturally occurring in the Central European region, are covered by the application. More than 200,000 images, depicting more than 1700 plant species, have been collected by thousands of users since the initial app release in 2016. CONCLUSION: Flora Capture allows experts, laymen and citizen scientists to collect a digital herbarium and share structured multi-modal observations of plants. Collected images contribute, e.g., to the training of plant identification algorithms, but also suit educational purposes. Additionally, presence records collected with each observation allow contribute to verifiable records of plant occurrences across the world. BioMed Central 2020-12-14 /pmc/articles/PMC7734824/ /pubmed/33317442 http://dx.doi.org/10.1186/s12859-020-03920-9 Text en © The Author(s) 2020 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Software
Boho, David
Rzanny, Michael
Wäldchen, Jana
Nitsche, Fabian
Deggelmann, Alice
Wittich, Hans Christian
Seeland, Marco
Mäder, Patrick
Flora Capture: a citizen science application for collecting structured plant observations
title Flora Capture: a citizen science application for collecting structured plant observations
title_full Flora Capture: a citizen science application for collecting structured plant observations
title_fullStr Flora Capture: a citizen science application for collecting structured plant observations
title_full_unstemmed Flora Capture: a citizen science application for collecting structured plant observations
title_short Flora Capture: a citizen science application for collecting structured plant observations
title_sort flora capture: a citizen science application for collecting structured plant observations
topic Software
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7734824/
https://www.ncbi.nlm.nih.gov/pubmed/33317442
http://dx.doi.org/10.1186/s12859-020-03920-9
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