Cargando…

Identification of candidate genes controlling chilling tolerance of rice in the cold region at the booting stage by BSA-Seq and RNA-Seq

Rice is sensitive to low temperatures, specifically at the booting stage. Chilling tolerance of rice is a quantitative trait loci that is governed by multiple genes, and thus, its precise identification through the conventional methods is an arduous task. In this study, we investigated the candidate...

Descripción completa

Detalles Bibliográficos
Autores principales:	Guo, Zhenhua, Cai, Lijun, Chen, Zhiqiang, Wang, Ruiying, Zhang, Lanming, Guan, Shiwu, Zhang, Shuhua, Ma, Wendong, Liu, Chuanxue, Pan, Guojun
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	The Royal Society 2020
Materias:	Genetics and Genomics
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7735347/ https://www.ncbi.nlm.nih.gov/pubmed/33391797 http://dx.doi.org/10.1098/rsos.201081

Ejemplares similares

Global analysis of differentially expressed genes between two Japonica rice varieties induced by low temperature during the booting stage by RNA-Seq
por: Guo, Zhenhua, et al.
Publicado: (2020)

Conjunctive Analyses of BSA-Seq and BSR-Seq to Identify Candidate Genes Controlling the Black Lemma and Pericarp Trait in Barley
por: Liu, Yajie, et al.
Publicado: (2023)

Low-temperature stress affects reactive oxygen species, osmotic adjustment substances, and antioxidants in rice (Oryza sativa L.) at the reproductive stage
por: Guo, Zhenhua, et al.
Publicado: (2022)

BSA-Seq for the Identification of Major Genes for EPN in Rice
por: Shen, Shen, et al.
Publicado: (2023)

Identification of Salt Tolerance Related Candidate Genes in ‘Sea Rice 86’ at the Seedling and Reproductive Stages Using QTL-Seq and BSA-Seq
por: Gao, Qinmei, et al.
Publicado: (2023)

Candidate genes for first flower node identified in pepper using combined SLAF-seq and BSA
por: Zhang, Xiaofen, et al.
Publicado: (2018)

Optimization of BSA-seq experiment for QTL mapping
por: Huang, Likun, et al.
Publicado: (2021)

Combined BSA-Seq Based Mapping and RNA-Seq Profiling Reveal Candidate Genes Associated with Plant Architecture in Brassica napus
por: Ye, Shenhua, et al.
Publicado: (2022)

Mapping and Identifying Candidate Genes Enabling Cadmium Accumulation in Brassica napus Revealed by Combined BSA-Seq and RNA-Seq Analysis
por: Wang, Huadong, et al.
Publicado: (2023)

Combined Analysis of BSA-Seq Based Mapping, RNA-Seq, and Metabolomic Unraveled Candidate Genes Associated with Panicle Grain Number in Rice (Oryza sativa L.)
por: Ma, Yafei, et al.
Publicado: (2022)

BSA-Seq Discovery and Functional Analysis of Candidate Hessian Fly (Mayetiola destructor) Avirulence Genes
por: Navarro-Escalante, Lucio, et al.
Publicado: (2020)

Rapid Mining of Candidate Genes for Verticillium Wilt Resistance in Cotton Based on BSA-Seq Analysis
por: Cui, Yanli, et al.
Publicado: (2021)

Integrating BSA-Seq with RNA-Seq Reveals a Novel Fasciated Ear5 Mutant in Maize
por: Yan, Pengshuai, et al.
Publicado: (2023)

Conjunctive Analyses of BSA-Seq and BSR-Seq to Reveal the Molecular Pathway of Leafy Head Formation in Chinese Cabbage
por: Li, Rui, et al.
Publicado: (2019)

Research Note: Combined analysis of BSA-seq based mapping and RNA-seq reveals candidate genes associated with sub-Columbian plumage in H line chickens
por: Li, Ruiting, et al.
Publicado: (2023)

Comparison of anther transcriptomes in response to cold stress at the reproductive stage between susceptible and resistant Japonica rice varieties
por: Guo, Zhenhua, et al.
Publicado: (2022)

BSA-Seq and Transcriptomic Analysis Provide Candidate Genes Associated with Inflorescence Architecture and Kernel Orientation by Phytohormone Homeostasis in Maize
por: Wang, Yang, et al.
Publicado: (2023)

Identification of starch candidate genes using SLAF-seq and BSA strategies and development of related SNP-CAPS markers in tetraploid potato
por: Li, Jiaqi, et al.
Publicado: (2021)

Conuping BSA-Seq and RNA-Seq Reveal the Molecular Pathway and Genes Associated with the Plant Height of Foxtail Millet (Setaria italica)
por: Gao, Yongbin, et al.
Publicado: (2022)

Coupling Seq-BSA and RNA-Seq Analyses Reveal the Molecular Pathway and Genes Associated with Heading Type in Chinese Cabbage
por: Gu, AiXia, et al.
Publicado: (2017)

Mapping of a QTL associated with sucrose content in peanut kernels using BSA-seq
por: Guo, Junjia, et al.
Publicado: (2023)

Conjunctive Analyses of BSA-Seq and BSR-Seq Unveil the Msβ-GAL and MsJMT as Key Candidate Genes for Cytoplasmic Male Sterility in Alfalfa (Medicago sativa L.)
por: Zhou, Le, et al.
Publicado: (2022)

The fractured landscape of RNA-seq alignment: the default in our STARs
por: Ballouz, Sara, et al.
Publicado: (2018)

Nick-seq for single-nucleotide resolution genomic maps of DNA modifications and damage
por: Cao, Bo, et al.
Publicado: (2020)

Mapping a Partial Andromonoecy Locus in Citrullus lanatus Using BSA-Seq and GWAS Approaches
por: Aguado, Encarnación, et al.
Publicado: (2020)

Genetic mapping of anthocyanin accumulation-related genes in pepper fruits using a combination of SLAF-seq and BSA
por: Wang, Guoyun, et al.
Publicado: (2018)

Effect of method of deduplication on estimation of differential gene expression using RNA-seq
por: Klepikova, Anna V., et al.
Publicado: (2017)

Bulked-Segregant Analysis Coupled to Whole Genome Sequencing (BSA-Seq) for Rapid Gene Cloning in Maize
por: Klein, Harry, et al.
Publicado: (2018)

QTL mapping and BSA-seq map a major QTL for the node of the first fruiting branch in cotton
por: Jia, Xiaoyun, et al.
Publicado: (2023)

Genetic Analysis of Cold Tolerance at the Germination and Booting Stages in Rice by Association Mapping
por: Pan, Yinghua, et al.
Publicado: (2015)

Integrated RNA-Seq and sRNA-Seq Analysis Identifies Chilling and Freezing Responsive Key Molecular Players and Pathways in Tea Plant (Camellia sinensis)
por: Zheng, Chao, et al.
Publicado: (2015)

Quantitative RNA-seq analysis of the Campylobacter jejuni transcriptome
por: Chaudhuri, Roy R., et al.
Publicado: (2011)

Identification of β-catenin binding regions in colon cancer cells using ChIP-Seq
por: Bottomly, Daniel, et al.
Publicado: (2010)

Active promoters give rise to false positive ‘Phantom Peaks’ in ChIP-seq experiments
por: Jain, Dhawal, et al.
Publicado: (2015)

Mapping Cucumber Vein Yellowing Virus Resistance in Cucumber (Cucumis sativus L.) by Using BSA-seq Analysis
por: Pujol, Marta, et al.
Publicado: (2019)

The combined analysis as the best strategy for Dual RNA-Seq mapping
por: Espindula, Eliandro, et al.
Publicado: (2020)

Cloning and Characterization of TaTGW-7A Gene Associated with Grain Weight in Wheat via SLAF-seq-BSA
por: Hu, Ming-Jian, et al.
Publicado: (2016)

A point mutation in LTT1 enhances cold tolerance at the booting stage in rice
por: Xu, Yufang, et al.
Publicado: (2020)

Genome-wide mapping of RNA Pol-II promoter usage in mouse tissues by ChIP-seq
por: Sun, Hao, et al.
Publicado: (2011)

Ab initio identification of transcription start sites in the Rhesus macaque genome by histone modification and RNA-Seq
por: Liu, Yi, et al.
Publicado: (2011)

Cannot write session to /tmp/vufind_sessions/sess_e8adr1072q4qt5dsffjstq47l8