Cargando…
Effectiveness of transfer learning for enhancing tumor classification with a convolutional neural network on frozen sections
Fast and accurate confirmation of metastasis on the frozen tissue section of intraoperative sentinel lymph node biopsy is an essential tool for critical surgical decisions. However, accurate diagnosis by pathologists is difficult within the time limitations. Training a robust and accurate deep learn...
Autores principales: | , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2020
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7736325/ https://www.ncbi.nlm.nih.gov/pubmed/33318495 http://dx.doi.org/10.1038/s41598-020-78129-0 |
_version_ | 1783622773509193728 |
---|---|
author | Kim, Young-Gon Kim, Sungchul Cho, Cristina Eunbee Song, In Hye Lee, Hee Jin Ahn, Soomin Park, So Yeon Gong, Gyungyub Kim, Namkug |
author_facet | Kim, Young-Gon Kim, Sungchul Cho, Cristina Eunbee Song, In Hye Lee, Hee Jin Ahn, Soomin Park, So Yeon Gong, Gyungyub Kim, Namkug |
author_sort | Kim, Young-Gon |
collection | PubMed |
description | Fast and accurate confirmation of metastasis on the frozen tissue section of intraoperative sentinel lymph node biopsy is an essential tool for critical surgical decisions. However, accurate diagnosis by pathologists is difficult within the time limitations. Training a robust and accurate deep learning model is also difficult owing to the limited number of frozen datasets with high quality labels. To overcome these issues, we validated the effectiveness of transfer learning from CAMELYON16 to improve performance of the convolutional neural network (CNN)-based classification model on our frozen dataset (N = 297) from Asan Medical Center (AMC). Among the 297 whole slide images (WSIs), 157 and 40 WSIs were used to train deep learning models with different dataset ratios at 2, 4, 8, 20, 40, and 100%. The remaining, i.e., 100 WSIs, were used to validate model performance in terms of patch- and slide-level classification. An additional 228 WSIs from Seoul National University Bundang Hospital (SNUBH) were used as an external validation. Three initial weights, i.e., scratch-based (random initialization), ImageNet-based, and CAMELYON16-based models were used to validate their effectiveness in external validation. In the patch-level classification results on the AMC dataset, CAMELYON16-based models trained with a small dataset (up to 40%, i.e., 62 WSIs) showed a significantly higher area under the curve (AUC) of 0.929 than those of the scratch- and ImageNet-based models at 0.897 and 0.919, respectively, while CAMELYON16-based and ImageNet-based models trained with 100% of the training dataset showed comparable AUCs at 0.944 and 0.943, respectively. For the external validation, CAMELYON16-based models showed higher AUCs than those of the scratch- and ImageNet-based models. Model performance for slide feasibility of the transfer learning to enhance model performance was validated in the case of frozen section datasets with limited numbers. |
format | Online Article Text |
id | pubmed-7736325 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-77363252020-12-15 Effectiveness of transfer learning for enhancing tumor classification with a convolutional neural network on frozen sections Kim, Young-Gon Kim, Sungchul Cho, Cristina Eunbee Song, In Hye Lee, Hee Jin Ahn, Soomin Park, So Yeon Gong, Gyungyub Kim, Namkug Sci Rep Article Fast and accurate confirmation of metastasis on the frozen tissue section of intraoperative sentinel lymph node biopsy is an essential tool for critical surgical decisions. However, accurate diagnosis by pathologists is difficult within the time limitations. Training a robust and accurate deep learning model is also difficult owing to the limited number of frozen datasets with high quality labels. To overcome these issues, we validated the effectiveness of transfer learning from CAMELYON16 to improve performance of the convolutional neural network (CNN)-based classification model on our frozen dataset (N = 297) from Asan Medical Center (AMC). Among the 297 whole slide images (WSIs), 157 and 40 WSIs were used to train deep learning models with different dataset ratios at 2, 4, 8, 20, 40, and 100%. The remaining, i.e., 100 WSIs, were used to validate model performance in terms of patch- and slide-level classification. An additional 228 WSIs from Seoul National University Bundang Hospital (SNUBH) were used as an external validation. Three initial weights, i.e., scratch-based (random initialization), ImageNet-based, and CAMELYON16-based models were used to validate their effectiveness in external validation. In the patch-level classification results on the AMC dataset, CAMELYON16-based models trained with a small dataset (up to 40%, i.e., 62 WSIs) showed a significantly higher area under the curve (AUC) of 0.929 than those of the scratch- and ImageNet-based models at 0.897 and 0.919, respectively, while CAMELYON16-based and ImageNet-based models trained with 100% of the training dataset showed comparable AUCs at 0.944 and 0.943, respectively. For the external validation, CAMELYON16-based models showed higher AUCs than those of the scratch- and ImageNet-based models. Model performance for slide feasibility of the transfer learning to enhance model performance was validated in the case of frozen section datasets with limited numbers. Nature Publishing Group UK 2020-12-14 /pmc/articles/PMC7736325/ /pubmed/33318495 http://dx.doi.org/10.1038/s41598-020-78129-0 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Kim, Young-Gon Kim, Sungchul Cho, Cristina Eunbee Song, In Hye Lee, Hee Jin Ahn, Soomin Park, So Yeon Gong, Gyungyub Kim, Namkug Effectiveness of transfer learning for enhancing tumor classification with a convolutional neural network on frozen sections |
title | Effectiveness of transfer learning for enhancing tumor classification with a convolutional neural network on frozen sections |
title_full | Effectiveness of transfer learning for enhancing tumor classification with a convolutional neural network on frozen sections |
title_fullStr | Effectiveness of transfer learning for enhancing tumor classification with a convolutional neural network on frozen sections |
title_full_unstemmed | Effectiveness of transfer learning for enhancing tumor classification with a convolutional neural network on frozen sections |
title_short | Effectiveness of transfer learning for enhancing tumor classification with a convolutional neural network on frozen sections |
title_sort | effectiveness of transfer learning for enhancing tumor classification with a convolutional neural network on frozen sections |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7736325/ https://www.ncbi.nlm.nih.gov/pubmed/33318495 http://dx.doi.org/10.1038/s41598-020-78129-0 |
work_keys_str_mv | AT kimyounggon effectivenessoftransferlearningforenhancingtumorclassificationwithaconvolutionalneuralnetworkonfrozensections AT kimsungchul effectivenessoftransferlearningforenhancingtumorclassificationwithaconvolutionalneuralnetworkonfrozensections AT chocristinaeunbee effectivenessoftransferlearningforenhancingtumorclassificationwithaconvolutionalneuralnetworkonfrozensections AT songinhye effectivenessoftransferlearningforenhancingtumorclassificationwithaconvolutionalneuralnetworkonfrozensections AT leeheejin effectivenessoftransferlearningforenhancingtumorclassificationwithaconvolutionalneuralnetworkonfrozensections AT ahnsoomin effectivenessoftransferlearningforenhancingtumorclassificationwithaconvolutionalneuralnetworkonfrozensections AT parksoyeon effectivenessoftransferlearningforenhancingtumorclassificationwithaconvolutionalneuralnetworkonfrozensections AT gonggyungyub effectivenessoftransferlearningforenhancingtumorclassificationwithaconvolutionalneuralnetworkonfrozensections AT kimnamkug effectivenessoftransferlearningforenhancingtumorclassificationwithaconvolutionalneuralnetworkonfrozensections |