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Properties and biological impact of RNA G-quadruplexes: from order to turmoil and back

Guanine-quadruplexes (G4s) are non-canonical four-stranded structures that can be formed in guanine (G) rich nucleic acid sequences. A great number of G-rich sequences capable of forming G4 structures have been described based on in vitro analysis, and evidence supporting their formation in live cel...

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Autores principales: Kharel, Prakash, Becker, Gertraud, Tsvetkov, Vladimir, Ivanov, Pavel
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7736831/
https://www.ncbi.nlm.nih.gov/pubmed/33264409
http://dx.doi.org/10.1093/nar/gkaa1126
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author Kharel, Prakash
Becker, Gertraud
Tsvetkov, Vladimir
Ivanov, Pavel
author_facet Kharel, Prakash
Becker, Gertraud
Tsvetkov, Vladimir
Ivanov, Pavel
author_sort Kharel, Prakash
collection PubMed
description Guanine-quadruplexes (G4s) are non-canonical four-stranded structures that can be formed in guanine (G) rich nucleic acid sequences. A great number of G-rich sequences capable of forming G4 structures have been described based on in vitro analysis, and evidence supporting their formation in live cells continues to accumulate. While formation of DNA G4s (dG4s) within chromatin in vivo has been supported by different chemical, imaging and genomic approaches, formation of RNA G4s (rG4s) in vivo remains a matter of discussion. Recent data support the dynamic nature of G4 formation in the transcriptome. Such dynamic fluctuation of rG4 folding-unfolding underpins the biological significance of these structures in the regulation of RNA metabolism. Moreover, rG4-mediated functions may ultimately be connected to mechanisms underlying disease pathologies and, potentially, provide novel options for therapeutics. In this framework, we will review the landscape of rG4s within the transcriptome, focus on their potential impact on biological processes, and consider an emerging connection of these functions in human health and disease.
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spelling pubmed-77368312020-12-17 Properties and biological impact of RNA G-quadruplexes: from order to turmoil and back Kharel, Prakash Becker, Gertraud Tsvetkov, Vladimir Ivanov, Pavel Nucleic Acids Res Survey and Summary Guanine-quadruplexes (G4s) are non-canonical four-stranded structures that can be formed in guanine (G) rich nucleic acid sequences. A great number of G-rich sequences capable of forming G4 structures have been described based on in vitro analysis, and evidence supporting their formation in live cells continues to accumulate. While formation of DNA G4s (dG4s) within chromatin in vivo has been supported by different chemical, imaging and genomic approaches, formation of RNA G4s (rG4s) in vivo remains a matter of discussion. Recent data support the dynamic nature of G4 formation in the transcriptome. Such dynamic fluctuation of rG4 folding-unfolding underpins the biological significance of these structures in the regulation of RNA metabolism. Moreover, rG4-mediated functions may ultimately be connected to mechanisms underlying disease pathologies and, potentially, provide novel options for therapeutics. In this framework, we will review the landscape of rG4s within the transcriptome, focus on their potential impact on biological processes, and consider an emerging connection of these functions in human health and disease. Oxford University Press 2020-12-02 /pmc/articles/PMC7736831/ /pubmed/33264409 http://dx.doi.org/10.1093/nar/gkaa1126 Text en © The Author(s) 2020. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Survey and Summary
Kharel, Prakash
Becker, Gertraud
Tsvetkov, Vladimir
Ivanov, Pavel
Properties and biological impact of RNA G-quadruplexes: from order to turmoil and back
title Properties and biological impact of RNA G-quadruplexes: from order to turmoil and back
title_full Properties and biological impact of RNA G-quadruplexes: from order to turmoil and back
title_fullStr Properties and biological impact of RNA G-quadruplexes: from order to turmoil and back
title_full_unstemmed Properties and biological impact of RNA G-quadruplexes: from order to turmoil and back
title_short Properties and biological impact of RNA G-quadruplexes: from order to turmoil and back
title_sort properties and biological impact of rna g-quadruplexes: from order to turmoil and back
topic Survey and Summary
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7736831/
https://www.ncbi.nlm.nih.gov/pubmed/33264409
http://dx.doi.org/10.1093/nar/gkaa1126
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