Cargando…

Re-annotation of genome microbial CoDing-Sequences: finding new genes and inaccurately annotated genes

BACKGROUND: Analysis of any newly sequenced bacterial genome starts with the identification of protein-coding genes. Despite the accumulation of multiple complete genome sequences, which provide useful comparisons with close relatives among other organisms during the annotation process, accurate gen...

Descripción completa

Detalles Bibliográficos
Autores principales:	Bocs, Stéphanie, Danchin, Antoine, Médigue, Claudine
Formato:	Texto
Lenguaje:	English
Publicado:	BioMed Central 2002
Materias:	Research article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC77393/ https://www.ncbi.nlm.nih.gov/pubmed/11879526 http://dx.doi.org/10.1186/1471-2105-3-5

Ejemplares similares

MaGe: a microbial genome annotation system supported by synteny results
por: Vallenet, David, et al.
Publicado: (2006)

MICheck: a web tool for fast checking of syntactic annotations of bacterial genomes
por: Cruveiller, Stéphane, et al.
Publicado: (2005)

Bacillus subtilis, the model Gram‐positive bacterium: 20 years of annotation refinement
por: Borriss, Rainer, et al.
Publicado: (2017)

Point Cloud Instance Segmentation with Inaccurate Bounding-Box Annotations
por: Peng, Yinyin, et al.
Publicado: (2023)

Re-annotation of the sequence > annotation: opportunities for the functional microbiologist
por: Barona-Gómez, Francisco
Publicado: (2015)

Re-Annotator: Annotation Pipeline for Microarray Probe Sequences
por: Arloth, Janine, et al.
Publicado: (2015)

Chado Controller: advanced annotation management with a community annotation system
por: Guignon, Valentin, et al.
Publicado: (2012)

GROOLS: reactive graph reasoning for genome annotation through biological processes
por: Mercier, Jonathan, et al.
Publicado: (2018)

An Integrative Method for Identifying the Over-Annotated Protein-Coding Genes in Microbial Genomes
por: Yu, Jia-Feng, et al.
Publicado: (2011)

MicroScope: an integrated platform for the annotation and exploration of microbial gene functions through genomic, pangenomic and metabolic comparative analysis
por: Vallenet, David, et al.
Publicado: (2020)

Distinct co-evolution patterns of genes associated to DNA polymerase III DnaE and PolC
por: Engelen, Stefan, et al.
Publicado: (2012)

ICDS database: interrupted CoDing sequences in prokaryotic genomes
por: Perrodou, Emmanuel, et al.
Publicado: (2006)

Re-Annotation of Protein-Coding Genes in the Genome of Saccharomyces cerevisiae Based on Support Vector Machines
por: Lin, Dan, et al.
Publicado: (2013)

Genome (re‐)annotation and open‐source annotation pipelines
por: Siezen, Roland J., et al.
Publicado: (2010)

Conceptualization of molecular findings by mining gene annotations
por: Chen, Vicky, et al.
Publicado: (2013)

Genome-wide annotation of protein-coding genes in pig
por: Karlsson, Max, et al.
Publicado: (2022)

MicroScope: a platform for microbial genome annotation and comparative genomics
por: Vallenet, D., et al.
Publicado: (2009)

Functional annotation of non-coding sequence variants
por: Ritchie, Graham R. S., et al.
Publicado: (2014)

Accurate annotation of protein coding sequences with IDTAXA
por: Cooley, Nicholas P, et al.
Publicado: (2021)

Code de droit international privé suisse annoté: Code DIP annoté
por: Patocchi, Paolo Michele, et al.
Publicado: (1995)

An Updated Functional Annotation of Protein-Coding Genes in the Cucumber Genome
por: Song, Hongtao, et al.
Publicado: (2018)

Re-annotation and re-analysis of the Campylobacter jejuni NCTC11168 genome sequence
por: Gundogdu, Ozan, et al.
Publicado: (2007)

The Protein Coded by a Short Open Reading Frame, Not by the Annotated Coding Sequence, Is the Main Gene Product of the Dual-Coding Gene MIEF1
por: Delcourt, Vivian, et al.
Publicado: (2018)

Re-assembly, quality evaluation, and annotation of 678 microbial eukaryotic reference transcriptomes
por: Johnson, Lisa K, et al.
Publicado: (2018)

Logical Gene Ontology Annotations (GOAL): exploring gene ontology annotations with OWL
por: Jupp, Simon, et al.
Publicado: (2012)

Annotation and re-sequencing of genes from de novo transcriptome assembly of Abies alba (Pinaceae)(1)
por: Roschanski, Anna M., et al.
Publicado: (2013)

Code pénal suisse annoté
por: Panchaud, André, et al.
Publicado: (1989)

Code pénal suisse annoté
por: Panchaud, André, et al.
Publicado: (1975)

The disease and gene annotations (DGA): an annotation resource for human disease
por: Peng, Kai, et al.
Publicado: (2013)

Les codes annotés : code penal annoté et expliqué d'après la jurisprudence et la doctrine
Publicado: (1881)

Re-annotation of eight Drosophila genomes
por: Yang, Haiwang, et al.
Publicado: (2018)

RNA-Seq improves annotation of protein-coding genes in the cucumber genome
por: Li, Zhen, et al.
Publicado: (2011)

Improved annotation of protein-coding genes boundaries in metazoan mitochondrial genomes
por: Donath, Alexander, et al.
Publicado: (2019)

GeneReporter—sequence-based document retrieval and annotation
por: Bartsch, Annekathrin, et al.
Publicado: (2011)

Re-annotation of the CAZy genes of Trichoderma reesei and transcription in the presence of lignocellulosic substrates
por: Häkkinen, Mari, et al.
Publicado: (2012)

OligoRAP – an Oligo Re-Annotation Pipeline to improve annotation and estimate target specificity
por: Neerincx, Pieter BT, et al.
Publicado: (2009)

Re-Annotation of Protein-Coding Genes in 10 Complete Genomes of Neisseriaceae Family by Combining Similarity-Based and Composition-Based Methods
por: Guo, Feng-Biao, et al.
Publicado: (2013)

AGeS: A Software System for Microbial Genome Sequence Annotation
por: Kumar, Kamal, et al.
Publicado: (2011)

Beyond sequencing: re-visiting annotations for PJL as a test case
por: Khan, Waqasuddin, et al.
Publicado: (2019)

Gene Ontology annotations at SGD: new data sources and annotation methods
por: Hong, Eurie L., et al.
Publicado: (2008)

Cannot write session to /tmp/vufind_sessions/sess_stettnh6v9dbtd0j6ecra16bah