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Patient-specific fine-tuning of convolutional neural networks for follow-up lesion quantification

Purpose: Convolutional neural network (CNN) methods have been proposed to quantify lesions in medical imaging. Commonly, more than one imaging examination is available for a patient, but the serial information in these images often remains unused. CNN-based methods have the potential to extract valu...

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Autores principales: Jansen, Mariëlle J. A., Kuijf, Hugo J., Dhara, Ashis K., Weaver, Nick A., Jan Biessels, Geert, Strand, Robin, Pluim, Josien P. W.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Society of Photo-Optical Instrumentation Engineers 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7744252/
https://www.ncbi.nlm.nih.gov/pubmed/33344673
http://dx.doi.org/10.1117/1.JMI.7.6.064003
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author Jansen, Mariëlle J. A.
Kuijf, Hugo J.
Dhara, Ashis K.
Weaver, Nick A.
Jan Biessels, Geert
Strand, Robin
Pluim, Josien P. W.
author_facet Jansen, Mariëlle J. A.
Kuijf, Hugo J.
Dhara, Ashis K.
Weaver, Nick A.
Jan Biessels, Geert
Strand, Robin
Pluim, Josien P. W.
author_sort Jansen, Mariëlle J. A.
collection PubMed
description Purpose: Convolutional neural network (CNN) methods have been proposed to quantify lesions in medical imaging. Commonly, more than one imaging examination is available for a patient, but the serial information in these images often remains unused. CNN-based methods have the potential to extract valuable information from previously acquired imaging to better quantify lesions on current imaging of the same patient. Approach: A pretrained CNN can be updated with a patient’s previously acquired imaging: patient-specific fine-tuning (FT). In this work, we studied the improvement in performance of lesion quantification methods on magnetic resonance images after FT compared to a pretrained base CNN. We applied the method to two different approaches: the detection of liver metastases and the segmentation of brain white matter hyperintensities (WMH). Results: The patient-specific fine-tuned CNN has a better performance than the base CNN. For the liver metastases, the median true positive rate increases from 0.67 to 0.85. For the WMH segmentation, the mean Dice similarity coefficient increases from 0.82 to 0.87. Conclusions: We showed that patient-specific FT has the potential to improve the lesion quantification performance of general CNNs by exploiting a patient’s previously acquired imaging.
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spelling pubmed-77442522021-12-17 Patient-specific fine-tuning of convolutional neural networks for follow-up lesion quantification Jansen, Mariëlle J. A. Kuijf, Hugo J. Dhara, Ashis K. Weaver, Nick A. Jan Biessels, Geert Strand, Robin Pluim, Josien P. W. J Med Imaging (Bellingham) Image Processing Purpose: Convolutional neural network (CNN) methods have been proposed to quantify lesions in medical imaging. Commonly, more than one imaging examination is available for a patient, but the serial information in these images often remains unused. CNN-based methods have the potential to extract valuable information from previously acquired imaging to better quantify lesions on current imaging of the same patient. Approach: A pretrained CNN can be updated with a patient’s previously acquired imaging: patient-specific fine-tuning (FT). In this work, we studied the improvement in performance of lesion quantification methods on magnetic resonance images after FT compared to a pretrained base CNN. We applied the method to two different approaches: the detection of liver metastases and the segmentation of brain white matter hyperintensities (WMH). Results: The patient-specific fine-tuned CNN has a better performance than the base CNN. For the liver metastases, the median true positive rate increases from 0.67 to 0.85. For the WMH segmentation, the mean Dice similarity coefficient increases from 0.82 to 0.87. Conclusions: We showed that patient-specific FT has the potential to improve the lesion quantification performance of general CNNs by exploiting a patient’s previously acquired imaging. Society of Photo-Optical Instrumentation Engineers 2020-12-17 2020-11 /pmc/articles/PMC7744252/ /pubmed/33344673 http://dx.doi.org/10.1117/1.JMI.7.6.064003 Text en © 2020 The Authors https://creativecommons.org/licenses/by/4.0/ Published by SPIE under a Creative Commons Attribution 4.0 Unported License. Distribution or reproduction of this work in whole or in part requires full attribution of the original publication, including its DOI.
spellingShingle Image Processing
Jansen, Mariëlle J. A.
Kuijf, Hugo J.
Dhara, Ashis K.
Weaver, Nick A.
Jan Biessels, Geert
Strand, Robin
Pluim, Josien P. W.
Patient-specific fine-tuning of convolutional neural networks for follow-up lesion quantification
title Patient-specific fine-tuning of convolutional neural networks for follow-up lesion quantification
title_full Patient-specific fine-tuning of convolutional neural networks for follow-up lesion quantification
title_fullStr Patient-specific fine-tuning of convolutional neural networks for follow-up lesion quantification
title_full_unstemmed Patient-specific fine-tuning of convolutional neural networks for follow-up lesion quantification
title_short Patient-specific fine-tuning of convolutional neural networks for follow-up lesion quantification
title_sort patient-specific fine-tuning of convolutional neural networks for follow-up lesion quantification
topic Image Processing
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7744252/
https://www.ncbi.nlm.nih.gov/pubmed/33344673
http://dx.doi.org/10.1117/1.JMI.7.6.064003
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