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Patient-specific fine-tuning of convolutional neural networks for follow-up lesion quantification
Purpose: Convolutional neural network (CNN) methods have been proposed to quantify lesions in medical imaging. Commonly, more than one imaging examination is available for a patient, but the serial information in these images often remains unused. CNN-based methods have the potential to extract valu...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Society of Photo-Optical Instrumentation Engineers
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7744252/ https://www.ncbi.nlm.nih.gov/pubmed/33344673 http://dx.doi.org/10.1117/1.JMI.7.6.064003 |
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author | Jansen, Mariëlle J. A. Kuijf, Hugo J. Dhara, Ashis K. Weaver, Nick A. Jan Biessels, Geert Strand, Robin Pluim, Josien P. W. |
author_facet | Jansen, Mariëlle J. A. Kuijf, Hugo J. Dhara, Ashis K. Weaver, Nick A. Jan Biessels, Geert Strand, Robin Pluim, Josien P. W. |
author_sort | Jansen, Mariëlle J. A. |
collection | PubMed |
description | Purpose: Convolutional neural network (CNN) methods have been proposed to quantify lesions in medical imaging. Commonly, more than one imaging examination is available for a patient, but the serial information in these images often remains unused. CNN-based methods have the potential to extract valuable information from previously acquired imaging to better quantify lesions on current imaging of the same patient. Approach: A pretrained CNN can be updated with a patient’s previously acquired imaging: patient-specific fine-tuning (FT). In this work, we studied the improvement in performance of lesion quantification methods on magnetic resonance images after FT compared to a pretrained base CNN. We applied the method to two different approaches: the detection of liver metastases and the segmentation of brain white matter hyperintensities (WMH). Results: The patient-specific fine-tuned CNN has a better performance than the base CNN. For the liver metastases, the median true positive rate increases from 0.67 to 0.85. For the WMH segmentation, the mean Dice similarity coefficient increases from 0.82 to 0.87. Conclusions: We showed that patient-specific FT has the potential to improve the lesion quantification performance of general CNNs by exploiting a patient’s previously acquired imaging. |
format | Online Article Text |
id | pubmed-7744252 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Society of Photo-Optical Instrumentation Engineers |
record_format | MEDLINE/PubMed |
spelling | pubmed-77442522021-12-17 Patient-specific fine-tuning of convolutional neural networks for follow-up lesion quantification Jansen, Mariëlle J. A. Kuijf, Hugo J. Dhara, Ashis K. Weaver, Nick A. Jan Biessels, Geert Strand, Robin Pluim, Josien P. W. J Med Imaging (Bellingham) Image Processing Purpose: Convolutional neural network (CNN) methods have been proposed to quantify lesions in medical imaging. Commonly, more than one imaging examination is available for a patient, but the serial information in these images often remains unused. CNN-based methods have the potential to extract valuable information from previously acquired imaging to better quantify lesions on current imaging of the same patient. Approach: A pretrained CNN can be updated with a patient’s previously acquired imaging: patient-specific fine-tuning (FT). In this work, we studied the improvement in performance of lesion quantification methods on magnetic resonance images after FT compared to a pretrained base CNN. We applied the method to two different approaches: the detection of liver metastases and the segmentation of brain white matter hyperintensities (WMH). Results: The patient-specific fine-tuned CNN has a better performance than the base CNN. For the liver metastases, the median true positive rate increases from 0.67 to 0.85. For the WMH segmentation, the mean Dice similarity coefficient increases from 0.82 to 0.87. Conclusions: We showed that patient-specific FT has the potential to improve the lesion quantification performance of general CNNs by exploiting a patient’s previously acquired imaging. Society of Photo-Optical Instrumentation Engineers 2020-12-17 2020-11 /pmc/articles/PMC7744252/ /pubmed/33344673 http://dx.doi.org/10.1117/1.JMI.7.6.064003 Text en © 2020 The Authors https://creativecommons.org/licenses/by/4.0/ Published by SPIE under a Creative Commons Attribution 4.0 Unported License. Distribution or reproduction of this work in whole or in part requires full attribution of the original publication, including its DOI. |
spellingShingle | Image Processing Jansen, Mariëlle J. A. Kuijf, Hugo J. Dhara, Ashis K. Weaver, Nick A. Jan Biessels, Geert Strand, Robin Pluim, Josien P. W. Patient-specific fine-tuning of convolutional neural networks for follow-up lesion quantification |
title | Patient-specific fine-tuning of convolutional neural networks for follow-up lesion quantification |
title_full | Patient-specific fine-tuning of convolutional neural networks for follow-up lesion quantification |
title_fullStr | Patient-specific fine-tuning of convolutional neural networks for follow-up lesion quantification |
title_full_unstemmed | Patient-specific fine-tuning of convolutional neural networks for follow-up lesion quantification |
title_short | Patient-specific fine-tuning of convolutional neural networks for follow-up lesion quantification |
title_sort | patient-specific fine-tuning of convolutional neural networks for follow-up lesion quantification |
topic | Image Processing |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7744252/ https://www.ncbi.nlm.nih.gov/pubmed/33344673 http://dx.doi.org/10.1117/1.JMI.7.6.064003 |
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