Cargando…

Identify and Validate the Transcriptomic, Functional Network, and Predictive Validity of FBXL19-AS1 in Hepatocellular Carcinoma

Hepatocellular carcinoma (HCC) is one of the most common neoplastic diseases worldwide. Available biomarkers are not sensitive enough for the diagnosis of HCC, hence seeking new biomarkers of HCC is urgent and challenging. The purpose of this study was to investigate the role of F-box and leucine-ri...

Descripción completa

Detalles Bibliográficos
Autores principales: He, Dingdong, Zhang, Xiaokang, Zhu, Xinyu, Maharjan, Narayani, Wang, Yingchao, Luo, Ping, Liang, Chunzi, Tu, Jiancheng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7744744/
https://www.ncbi.nlm.nih.gov/pubmed/33344260
http://dx.doi.org/10.3389/fonc.2020.609601
_version_ 1783624487959265280
author He, Dingdong
Zhang, Xiaokang
Zhu, Xinyu
Maharjan, Narayani
Wang, Yingchao
Luo, Ping
Liang, Chunzi
Tu, Jiancheng
author_facet He, Dingdong
Zhang, Xiaokang
Zhu, Xinyu
Maharjan, Narayani
Wang, Yingchao
Luo, Ping
Liang, Chunzi
Tu, Jiancheng
author_sort He, Dingdong
collection PubMed
description Hepatocellular carcinoma (HCC) is one of the most common neoplastic diseases worldwide. Available biomarkers are not sensitive enough for the diagnosis of HCC, hence seeking new biomarkers of HCC is urgent and challenging. The purpose of this study was to investigate the role of F-box and leucine-rich repeat protein 19-antisense RNA 1 (FBXL19-AS1) through a functional network and inquire into its diagnostic and prognostic value in HCC. A comprehensive strategy of genomic data mining, bioinformatics and experimental validation was used to evaluate the clinical value of FBXL19-AS1 in the diagnosis and prognosis of HCC and to identify the pathways in which FBXL19-AS1 might be involved. FBXL19-AS1 was up-regulated in HCC tissues, and its high expression was associated with TNM stage and poor prognosis of HCC patients. The combination of FBXL19-AS1 and alpha-fetoprotein (AFP) in plasma could prominently improve the diagnostic validity for HCC. FBXL19-AS1 might stabilize FBXL19 to reduce the amount of macrophage M1, and then promote the occurrence and development of HCC. Meanwhile, FBXL19-AS1 might participate in regulating HCC related pathways through FBXL19-AS1-miRNA-mRNA network. Our findings indicated that FBXL19-AS1 not only serves as a potential biomarker for HCC diagnosis and prognosis, but also might be functionally carcinogenic.
format Online
Article
Text
id pubmed-7744744
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-77447442020-12-18 Identify and Validate the Transcriptomic, Functional Network, and Predictive Validity of FBXL19-AS1 in Hepatocellular Carcinoma He, Dingdong Zhang, Xiaokang Zhu, Xinyu Maharjan, Narayani Wang, Yingchao Luo, Ping Liang, Chunzi Tu, Jiancheng Front Oncol Oncology Hepatocellular carcinoma (HCC) is one of the most common neoplastic diseases worldwide. Available biomarkers are not sensitive enough for the diagnosis of HCC, hence seeking new biomarkers of HCC is urgent and challenging. The purpose of this study was to investigate the role of F-box and leucine-rich repeat protein 19-antisense RNA 1 (FBXL19-AS1) through a functional network and inquire into its diagnostic and prognostic value in HCC. A comprehensive strategy of genomic data mining, bioinformatics and experimental validation was used to evaluate the clinical value of FBXL19-AS1 in the diagnosis and prognosis of HCC and to identify the pathways in which FBXL19-AS1 might be involved. FBXL19-AS1 was up-regulated in HCC tissues, and its high expression was associated with TNM stage and poor prognosis of HCC patients. The combination of FBXL19-AS1 and alpha-fetoprotein (AFP) in plasma could prominently improve the diagnostic validity for HCC. FBXL19-AS1 might stabilize FBXL19 to reduce the amount of macrophage M1, and then promote the occurrence and development of HCC. Meanwhile, FBXL19-AS1 might participate in regulating HCC related pathways through FBXL19-AS1-miRNA-mRNA network. Our findings indicated that FBXL19-AS1 not only serves as a potential biomarker for HCC diagnosis and prognosis, but also might be functionally carcinogenic. Frontiers Media S.A. 2020-12-03 /pmc/articles/PMC7744744/ /pubmed/33344260 http://dx.doi.org/10.3389/fonc.2020.609601 Text en Copyright © 2020 He, Zhang, Zhu, Maharjan, Wang, Luo, Liang and Tu http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Oncology
He, Dingdong
Zhang, Xiaokang
Zhu, Xinyu
Maharjan, Narayani
Wang, Yingchao
Luo, Ping
Liang, Chunzi
Tu, Jiancheng
Identify and Validate the Transcriptomic, Functional Network, and Predictive Validity of FBXL19-AS1 in Hepatocellular Carcinoma
title Identify and Validate the Transcriptomic, Functional Network, and Predictive Validity of FBXL19-AS1 in Hepatocellular Carcinoma
title_full Identify and Validate the Transcriptomic, Functional Network, and Predictive Validity of FBXL19-AS1 in Hepatocellular Carcinoma
title_fullStr Identify and Validate the Transcriptomic, Functional Network, and Predictive Validity of FBXL19-AS1 in Hepatocellular Carcinoma
title_full_unstemmed Identify and Validate the Transcriptomic, Functional Network, and Predictive Validity of FBXL19-AS1 in Hepatocellular Carcinoma
title_short Identify and Validate the Transcriptomic, Functional Network, and Predictive Validity of FBXL19-AS1 in Hepatocellular Carcinoma
title_sort identify and validate the transcriptomic, functional network, and predictive validity of fbxl19-as1 in hepatocellular carcinoma
topic Oncology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7744744/
https://www.ncbi.nlm.nih.gov/pubmed/33344260
http://dx.doi.org/10.3389/fonc.2020.609601
work_keys_str_mv AT hedingdong identifyandvalidatethetranscriptomicfunctionalnetworkandpredictivevalidityoffbxl19as1inhepatocellularcarcinoma
AT zhangxiaokang identifyandvalidatethetranscriptomicfunctionalnetworkandpredictivevalidityoffbxl19as1inhepatocellularcarcinoma
AT zhuxinyu identifyandvalidatethetranscriptomicfunctionalnetworkandpredictivevalidityoffbxl19as1inhepatocellularcarcinoma
AT maharjannarayani identifyandvalidatethetranscriptomicfunctionalnetworkandpredictivevalidityoffbxl19as1inhepatocellularcarcinoma
AT wangyingchao identifyandvalidatethetranscriptomicfunctionalnetworkandpredictivevalidityoffbxl19as1inhepatocellularcarcinoma
AT luoping identifyandvalidatethetranscriptomicfunctionalnetworkandpredictivevalidityoffbxl19as1inhepatocellularcarcinoma
AT liangchunzi identifyandvalidatethetranscriptomicfunctionalnetworkandpredictivevalidityoffbxl19as1inhepatocellularcarcinoma
AT tujiancheng identifyandvalidatethetranscriptomicfunctionalnetworkandpredictivevalidityoffbxl19as1inhepatocellularcarcinoma