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Machine learning, waveform preprocessing and feature extraction methods for classification of acoustic startle waveforms

The acoustic startle response (ASR) is an involuntary muscle reflex that occurs in response to a transient loud sound and is a highly-utilized method of assessing hearing status in animal models. Currently, a high level of variability exists in the recording and interpretation of ASRs due to the lac...

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Detalles Bibliográficos
Autores principales: Fawcett, Timothy J., Cooper, Chad S., Longenecker, Ryan J., Walton, Joseph P.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7744771/
https://www.ncbi.nlm.nih.gov/pubmed/33354518
http://dx.doi.org/10.1016/j.mex.2020.101166
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author Fawcett, Timothy J.
Cooper, Chad S.
Longenecker, Ryan J.
Walton, Joseph P.
author_facet Fawcett, Timothy J.
Cooper, Chad S.
Longenecker, Ryan J.
Walton, Joseph P.
author_sort Fawcett, Timothy J.
collection PubMed
description The acoustic startle response (ASR) is an involuntary muscle reflex that occurs in response to a transient loud sound and is a highly-utilized method of assessing hearing status in animal models. Currently, a high level of variability exists in the recording and interpretation of ASRs due to the lack of standardization for collecting and analyzing these measures. An ensembled machine learning model was trained to predict whether an ASR waveform is a startle or non-startle using highly-predictive features extracted from normalized ASR waveforms collected from young adult CBA/CaJ mice. Features were extracted from the normalized waveform as well as the power spectral density estimates and continuous wavelet transforms of the normalized waveform. Machine learning models utilizing methods from different families of algorithms were individually trained and then ensembled together, resulting in an extremely robust model. • ASR waveforms were normalized using the mean and standard deviation computed before the startle elicitor was presented; • 9 machine learning algorithms from 4 different families of algorithms were individually trained using features extracted from the normalized ASR waveforms; • Trained machine learning models were ensembled to produce an extremely robust classifier.
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spelling pubmed-77447712020-12-21 Machine learning, waveform preprocessing and feature extraction methods for classification of acoustic startle waveforms Fawcett, Timothy J. Cooper, Chad S. Longenecker, Ryan J. Walton, Joseph P. MethodsX Method Article The acoustic startle response (ASR) is an involuntary muscle reflex that occurs in response to a transient loud sound and is a highly-utilized method of assessing hearing status in animal models. Currently, a high level of variability exists in the recording and interpretation of ASRs due to the lack of standardization for collecting and analyzing these measures. An ensembled machine learning model was trained to predict whether an ASR waveform is a startle or non-startle using highly-predictive features extracted from normalized ASR waveforms collected from young adult CBA/CaJ mice. Features were extracted from the normalized waveform as well as the power spectral density estimates and continuous wavelet transforms of the normalized waveform. Machine learning models utilizing methods from different families of algorithms were individually trained and then ensembled together, resulting in an extremely robust model. • ASR waveforms were normalized using the mean and standard deviation computed before the startle elicitor was presented; • 9 machine learning algorithms from 4 different families of algorithms were individually trained using features extracted from the normalized ASR waveforms; • Trained machine learning models were ensembled to produce an extremely robust classifier. Elsevier 2020-12-01 /pmc/articles/PMC7744771/ /pubmed/33354518 http://dx.doi.org/10.1016/j.mex.2020.101166 Text en © 2020 The Authors http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Method Article
Fawcett, Timothy J.
Cooper, Chad S.
Longenecker, Ryan J.
Walton, Joseph P.
Machine learning, waveform preprocessing and feature extraction methods for classification of acoustic startle waveforms
title Machine learning, waveform preprocessing and feature extraction methods for classification of acoustic startle waveforms
title_full Machine learning, waveform preprocessing and feature extraction methods for classification of acoustic startle waveforms
title_fullStr Machine learning, waveform preprocessing and feature extraction methods for classification of acoustic startle waveforms
title_full_unstemmed Machine learning, waveform preprocessing and feature extraction methods for classification of acoustic startle waveforms
title_short Machine learning, waveform preprocessing and feature extraction methods for classification of acoustic startle waveforms
title_sort machine learning, waveform preprocessing and feature extraction methods for classification of acoustic startle waveforms
topic Method Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7744771/
https://www.ncbi.nlm.nih.gov/pubmed/33354518
http://dx.doi.org/10.1016/j.mex.2020.101166
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