Cargando…

FCGR1A Serves as a Novel Biomarker and Correlates With Immune Infiltration in Four Cancer Types

BACKGROUND: FCGR1A encodes a protein that plays an important role in the immune response. The prognostic impact and immune infiltration of FCGR1A in heterogeneous cancers remain unclear. METHODS: Differential expression of FCGR1A between tumor and normal tissues and the discrepancies in overall surv...

Descripción completa

Detalles Bibliográficos
Autores principales: Xu, Ji-li, Guo, Yong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7744780/
https://www.ncbi.nlm.nih.gov/pubmed/33344503
http://dx.doi.org/10.3389/fmolb.2020.581615
_version_ 1783624496315367424
author Xu, Ji-li
Guo, Yong
author_facet Xu, Ji-li
Guo, Yong
author_sort Xu, Ji-li
collection PubMed
description BACKGROUND: FCGR1A encodes a protein that plays an important role in the immune response. The prognostic impact and immune infiltration of FCGR1A in heterogeneous cancers remain unclear. METHODS: Differential expression of FCGR1A between tumor and normal tissues and the discrepancies in overall survival (OS) among diverse cancer types were performed by Gene Expression Profiling Interactive Analysis. The correlation between FCGR1A and immune cells or gene marker sets of immune infiltrates was analyzed via Tumor Immune Estimation Resource (TIMER). Gene Ontology (GO), Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis, and protein-to-protein interaction (PPI) network were used to explore the function and related genes of FCGR1A. The relationships among these genes were further analyzed by TIMER. RESULTS: FCGR1A is highly expressed in various cancer types. FCGR1A was significantly correlated with the OS of cervical and endocervical cancer (CESC), cholangiocarcinoma (CHOL), kidney renal clear cell carcinoma (KIRC), and skin cutaneous melanoma (SKCM) (P < 0.05). High expression of FCGR1A meant a better prognosis besides KIRC. FCGR1A showed significant differences at different stages of KIRC and SKCM (P < 0.05). Furthermore, FCGR1A was notably associated with infiltrating levels of CD4(+) T cells, CD8(+) T cells, B cells, macrophages, neutrophils, and dendritic cells in the four cancers (P < 0.05). FCGR1A also showed close relevance with different immune gene markers. The copy number variation of FCGR1A significantly influenced the abundance of immune infiltration in KIRC and SKCM. GO, KEGG analysis, and PPI network analysis revealed that FCGR1A is involved in many pathophysiological processes and was most related to FCGR3A. And this gene indicated highly significant positive correlations with FCGR1A in four cancers. CONCLUSION: FCGR1A may be a potential prognostic biomarker and related to immune infiltration levels in diverse cancers, especially in CESC, CHOL, KIRC, and SKCM. Besides, FCGR1A may be involved in the activation, regulation, or induction of immune cells and diverse physiological and pathological processes.
format Online
Article
Text
id pubmed-7744780
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-77447802020-12-18 FCGR1A Serves as a Novel Biomarker and Correlates With Immune Infiltration in Four Cancer Types Xu, Ji-li Guo, Yong Front Mol Biosci Molecular Biosciences BACKGROUND: FCGR1A encodes a protein that plays an important role in the immune response. The prognostic impact and immune infiltration of FCGR1A in heterogeneous cancers remain unclear. METHODS: Differential expression of FCGR1A between tumor and normal tissues and the discrepancies in overall survival (OS) among diverse cancer types were performed by Gene Expression Profiling Interactive Analysis. The correlation between FCGR1A and immune cells or gene marker sets of immune infiltrates was analyzed via Tumor Immune Estimation Resource (TIMER). Gene Ontology (GO), Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis, and protein-to-protein interaction (PPI) network were used to explore the function and related genes of FCGR1A. The relationships among these genes were further analyzed by TIMER. RESULTS: FCGR1A is highly expressed in various cancer types. FCGR1A was significantly correlated with the OS of cervical and endocervical cancer (CESC), cholangiocarcinoma (CHOL), kidney renal clear cell carcinoma (KIRC), and skin cutaneous melanoma (SKCM) (P < 0.05). High expression of FCGR1A meant a better prognosis besides KIRC. FCGR1A showed significant differences at different stages of KIRC and SKCM (P < 0.05). Furthermore, FCGR1A was notably associated with infiltrating levels of CD4(+) T cells, CD8(+) T cells, B cells, macrophages, neutrophils, and dendritic cells in the four cancers (P < 0.05). FCGR1A also showed close relevance with different immune gene markers. The copy number variation of FCGR1A significantly influenced the abundance of immune infiltration in KIRC and SKCM. GO, KEGG analysis, and PPI network analysis revealed that FCGR1A is involved in many pathophysiological processes and was most related to FCGR3A. And this gene indicated highly significant positive correlations with FCGR1A in four cancers. CONCLUSION: FCGR1A may be a potential prognostic biomarker and related to immune infiltration levels in diverse cancers, especially in CESC, CHOL, KIRC, and SKCM. Besides, FCGR1A may be involved in the activation, regulation, or induction of immune cells and diverse physiological and pathological processes. Frontiers Media S.A. 2020-12-03 /pmc/articles/PMC7744780/ /pubmed/33344503 http://dx.doi.org/10.3389/fmolb.2020.581615 Text en Copyright © 2020 Xu and Guo. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Molecular Biosciences
Xu, Ji-li
Guo, Yong
FCGR1A Serves as a Novel Biomarker and Correlates With Immune Infiltration in Four Cancer Types
title FCGR1A Serves as a Novel Biomarker and Correlates With Immune Infiltration in Four Cancer Types
title_full FCGR1A Serves as a Novel Biomarker and Correlates With Immune Infiltration in Four Cancer Types
title_fullStr FCGR1A Serves as a Novel Biomarker and Correlates With Immune Infiltration in Four Cancer Types
title_full_unstemmed FCGR1A Serves as a Novel Biomarker and Correlates With Immune Infiltration in Four Cancer Types
title_short FCGR1A Serves as a Novel Biomarker and Correlates With Immune Infiltration in Four Cancer Types
title_sort fcgr1a serves as a novel biomarker and correlates with immune infiltration in four cancer types
topic Molecular Biosciences
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7744780/
https://www.ncbi.nlm.nih.gov/pubmed/33344503
http://dx.doi.org/10.3389/fmolb.2020.581615
work_keys_str_mv AT xujili fcgr1aservesasanovelbiomarkerandcorrelateswithimmuneinfiltrationinfourcancertypes
AT guoyong fcgr1aservesasanovelbiomarkerandcorrelateswithimmuneinfiltrationinfourcancertypes