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Sample-Specific Prediction Error Measures in Spectroscopy
In applied spectroscopy, the purpose of multivariate calibration is almost exclusively to relate analyte concentrations and spectroscopic measurements. The multivariate calibration model provides estimates of analyte concentrations based on the spectroscopic measurements. Predictive performance is o...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
SAGE Publications
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7745614/ https://www.ncbi.nlm.nih.gov/pubmed/32116011 http://dx.doi.org/10.1177/0003702820913562 |
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author | Emil Eskildsen, Carl Næs, Tormod |
author_facet | Emil Eskildsen, Carl Næs, Tormod |
author_sort | Emil Eskildsen, Carl |
collection | PubMed |
description | In applied spectroscopy, the purpose of multivariate calibration is almost exclusively to relate analyte concentrations and spectroscopic measurements. The multivariate calibration model provides estimates of analyte concentrations based on the spectroscopic measurements. Predictive performance is often evaluated based on a mean squared error. While this average measure can be used in model selection, it is not satisfactory for evaluating the uncertainty of individual predictions. For a calibration, the uncertainties are sample specific. This is especially true for multivariate calibration, where interfering compounds may be present. Consider in-line spectroscopic measurements during a chemical reaction, production, etc. Here, reference values are not necessarily available. Hence, one should know the uncertainty of a given prediction in order to use that prediction for telling the state of the chemical reaction, adjusting the process, etc. In this paper, we discuss the influence of variance and bias on sample-specific prediction errors in multivariate calibration. We compare theoretical formulae with results obtained on experimental data. The results point towards the fact that bias contribution cannot necessarily be neglected when assessing sample-specific prediction ability in practice. |
format | Online Article Text |
id | pubmed-7745614 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | SAGE Publications |
record_format | MEDLINE/PubMed |
spelling | pubmed-77456142021-01-08 Sample-Specific Prediction Error Measures in Spectroscopy Emil Eskildsen, Carl Næs, Tormod Appl Spectrosc Articles In applied spectroscopy, the purpose of multivariate calibration is almost exclusively to relate analyte concentrations and spectroscopic measurements. The multivariate calibration model provides estimates of analyte concentrations based on the spectroscopic measurements. Predictive performance is often evaluated based on a mean squared error. While this average measure can be used in model selection, it is not satisfactory for evaluating the uncertainty of individual predictions. For a calibration, the uncertainties are sample specific. This is especially true for multivariate calibration, where interfering compounds may be present. Consider in-line spectroscopic measurements during a chemical reaction, production, etc. Here, reference values are not necessarily available. Hence, one should know the uncertainty of a given prediction in order to use that prediction for telling the state of the chemical reaction, adjusting the process, etc. In this paper, we discuss the influence of variance and bias on sample-specific prediction errors in multivariate calibration. We compare theoretical formulae with results obtained on experimental data. The results point towards the fact that bias contribution cannot necessarily be neglected when assessing sample-specific prediction ability in practice. SAGE Publications 2020-05-26 2020-07 /pmc/articles/PMC7745614/ /pubmed/32116011 http://dx.doi.org/10.1177/0003702820913562 Text en © The Author(s) 2020 https://creativecommons.org/licenses/by/4.0/ This article is distributed under the terms of the Creative Commons Attribution 4.0 License (https://creativecommons.org/licenses/by/4.0/) which permits any use, reproduction and distribution of the work without further permission provided the original work is attributed as specified on the SAGE and Open Access pages (https://us.sagepub.com/en-us/nam/open-access-at-sage). |
spellingShingle | Articles Emil Eskildsen, Carl Næs, Tormod Sample-Specific Prediction Error Measures in Spectroscopy |
title | Sample-Specific Prediction Error Measures in Spectroscopy |
title_full | Sample-Specific Prediction Error Measures in Spectroscopy |
title_fullStr | Sample-Specific Prediction Error Measures in Spectroscopy |
title_full_unstemmed | Sample-Specific Prediction Error Measures in Spectroscopy |
title_short | Sample-Specific Prediction Error Measures in Spectroscopy |
title_sort | sample-specific prediction error measures in spectroscopy |
topic | Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7745614/ https://www.ncbi.nlm.nih.gov/pubmed/32116011 http://dx.doi.org/10.1177/0003702820913562 |
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