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MuscleAtlasExplorer: a web service for studying gene expression in human skeletal muscle

MuscleAtlasExplorer is a freely available web application that allows for the exploration of gene expression data from human skeletal muscle. It draws from an extensive publicly available dataset of 1654 skeletal muscle expression microarray samples. Detailed, manually curated, patient phenotype dat...

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Detalles Bibliográficos
Autores principales: Asplund, Olof, Rung, Johan, Groop, Leif, Prasad B, Rashmi, Hansson, Ola
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7747357/
https://www.ncbi.nlm.nih.gov/pubmed/33338203
http://dx.doi.org/10.1093/database/baaa111
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author Asplund, Olof
Rung, Johan
Groop, Leif
Prasad B, Rashmi
Hansson, Ola
author_facet Asplund, Olof
Rung, Johan
Groop, Leif
Prasad B, Rashmi
Hansson, Ola
author_sort Asplund, Olof
collection PubMed
description MuscleAtlasExplorer is a freely available web application that allows for the exploration of gene expression data from human skeletal muscle. It draws from an extensive publicly available dataset of 1654 skeletal muscle expression microarray samples. Detailed, manually curated, patient phenotype data, with information such as age, sex, BMI and disease status, are combined with skeletal muscle gene expression to provide insights into gene function in skeletal muscle. It aims to facilitate easy exploration of the data using powerful data visualization functions, while allowing for sample selection, in-depth inspection and further analysis using external tools. AVAILABILITY: MuscleAtlasExplorer is available at https://mae.crc.med.lu.se/mae2.
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spelling pubmed-77473572020-12-22 MuscleAtlasExplorer: a web service for studying gene expression in human skeletal muscle Asplund, Olof Rung, Johan Groop, Leif Prasad B, Rashmi Hansson, Ola Database (Oxford) Database Tool MuscleAtlasExplorer is a freely available web application that allows for the exploration of gene expression data from human skeletal muscle. It draws from an extensive publicly available dataset of 1654 skeletal muscle expression microarray samples. Detailed, manually curated, patient phenotype data, with information such as age, sex, BMI and disease status, are combined with skeletal muscle gene expression to provide insights into gene function in skeletal muscle. It aims to facilitate easy exploration of the data using powerful data visualization functions, while allowing for sample selection, in-depth inspection and further analysis using external tools. AVAILABILITY: MuscleAtlasExplorer is available at https://mae.crc.med.lu.se/mae2. Oxford University Press 2020-12-18 /pmc/articles/PMC7747357/ /pubmed/33338203 http://dx.doi.org/10.1093/database/baaa111 Text en © The Author(s) 2021. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Database Tool
Asplund, Olof
Rung, Johan
Groop, Leif
Prasad B, Rashmi
Hansson, Ola
MuscleAtlasExplorer: a web service for studying gene expression in human skeletal muscle
title MuscleAtlasExplorer: a web service for studying gene expression in human skeletal muscle
title_full MuscleAtlasExplorer: a web service for studying gene expression in human skeletal muscle
title_fullStr MuscleAtlasExplorer: a web service for studying gene expression in human skeletal muscle
title_full_unstemmed MuscleAtlasExplorer: a web service for studying gene expression in human skeletal muscle
title_short MuscleAtlasExplorer: a web service for studying gene expression in human skeletal muscle
title_sort muscleatlasexplorer: a web service for studying gene expression in human skeletal muscle
topic Database Tool
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7747357/
https://www.ncbi.nlm.nih.gov/pubmed/33338203
http://dx.doi.org/10.1093/database/baaa111
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