The complete plastid genome of Ruppia brevipedunculata Shuo Yu & den Hartog

The taxonomy of Ruppia has long been confused due to its high plasticity in morphology. In this study, the complete plastid genome sequence of Ruppia brevipedunculata was successfully sequenced by the technology of Illumina. The whole plastid genome length was 158,943 bp and contained a typical quad...

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Autores principales: Yu, Shuo, Li, Xiaojuan, Jiang, Kai, Shi, Miaomiao
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748422/
https://www.ncbi.nlm.nih.gov/pubmed/33366608
http://dx.doi.org/10.1080/23802359.2019.1704653
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author Yu, Shuo
Li, Xiaojuan
Jiang, Kai
Shi, Miaomiao
author_facet Yu, Shuo
Li, Xiaojuan
Jiang, Kai
Shi, Miaomiao
author_sort Yu, Shuo
collection PubMed
description The taxonomy of Ruppia has long been confused due to its high plasticity in morphology. In this study, the complete plastid genome sequence of Ruppia brevipedunculata was successfully sequenced by the technology of Illumina. The whole plastid genome length was 158,943 bp and contained a typical quadripartite structure including one large single copy (LSC) region (88,857 bp), one small single copy (SSC) region (19,130bp) and a pair of inverted repeats (IR) regions (25,478bp). The GC content of this genome was 35.8%. The whole genome contained 132 genes including 87 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. The phylogenetic analysis indicated that R. brevipedunculata and R. sinensis formed a distinct clade separated from Potamogeton perfoliatus.
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spelling pubmed-77484222020-12-22 The complete plastid genome of Ruppia brevipedunculata Shuo Yu & den Hartog Yu, Shuo Li, Xiaojuan Jiang, Kai Shi, Miaomiao Mitochondrial DNA B Resour Mitogenome Announcement The taxonomy of Ruppia has long been confused due to its high plasticity in morphology. In this study, the complete plastid genome sequence of Ruppia brevipedunculata was successfully sequenced by the technology of Illumina. The whole plastid genome length was 158,943 bp and contained a typical quadripartite structure including one large single copy (LSC) region (88,857 bp), one small single copy (SSC) region (19,130bp) and a pair of inverted repeats (IR) regions (25,478bp). The GC content of this genome was 35.8%. The whole genome contained 132 genes including 87 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. The phylogenetic analysis indicated that R. brevipedunculata and R. sinensis formed a distinct clade separated from Potamogeton perfoliatus. Taylor & Francis 2020-01-10 /pmc/articles/PMC7748422/ /pubmed/33366608 http://dx.doi.org/10.1080/23802359.2019.1704653 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Yu, Shuo
Li, Xiaojuan
Jiang, Kai
Shi, Miaomiao
The complete plastid genome of Ruppia brevipedunculata Shuo Yu & den Hartog
title The complete plastid genome of Ruppia brevipedunculata Shuo Yu & den Hartog
title_full The complete plastid genome of Ruppia brevipedunculata Shuo Yu & den Hartog
title_fullStr The complete plastid genome of Ruppia brevipedunculata Shuo Yu & den Hartog
title_full_unstemmed The complete plastid genome of Ruppia brevipedunculata Shuo Yu & den Hartog
title_short The complete plastid genome of Ruppia brevipedunculata Shuo Yu & den Hartog
title_sort complete plastid genome of ruppia brevipedunculata shuo yu & den hartog
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748422/
https://www.ncbi.nlm.nih.gov/pubmed/33366608
http://dx.doi.org/10.1080/23802359.2019.1704653
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