The complete chloroplast genome sequence of Santalum album

The first complete chloroplast genome (cpDNA) sequence of Santalum album was determined from Illumina HiSeq pair-end sequencing data in this study. The cpDNA is 144,101 bp in length, contains a large single copy region (LSC) of 83,796 bp and a small single copy region (SSC) of 11,277 bp, which were...

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Detalles Bibliográficos
Autores principales: Yang, Dejun, Qiu, Qiong, Xu, Linhong, Xu, Yumei, Wang, Yi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748440/
https://www.ncbi.nlm.nih.gov/pubmed/33366578
http://dx.doi.org/10.1080/23802359.2019.1704199
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author Yang, Dejun
Qiu, Qiong
Xu, Linhong
Xu, Yumei
Wang, Yi
author_facet Yang, Dejun
Qiu, Qiong
Xu, Linhong
Xu, Yumei
Wang, Yi
author_sort Yang, Dejun
collection PubMed
description The first complete chloroplast genome (cpDNA) sequence of Santalum album was determined from Illumina HiSeq pair-end sequencing data in this study. The cpDNA is 144,101 bp in length, contains a large single copy region (LSC) of 83,796 bp and a small single copy region (SSC) of 11,277 bp, which were separated by a pair of inverted repeats (IR) regions of 24,514 bp. The genome contains 123 genes, including 80 protein-coding genes, 8 ribosomal RNA genes, and 35 transfer RNA genes. The overall GC content of the whole genome is 38.0%, and the corresponding values of the LSC, SSC, and IR regions are 35.9%, 31.4%, and 43.1%, respectively. Further phylogenomic analysis showed that S. album and Osyris alba clustered in a clade in Santalales order.
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spelling pubmed-77484402020-12-22 The complete chloroplast genome sequence of Santalum album Yang, Dejun Qiu, Qiong Xu, Linhong Xu, Yumei Wang, Yi Mitochondrial DNA B Resour Mitogenome Announcement The first complete chloroplast genome (cpDNA) sequence of Santalum album was determined from Illumina HiSeq pair-end sequencing data in this study. The cpDNA is 144,101 bp in length, contains a large single copy region (LSC) of 83,796 bp and a small single copy region (SSC) of 11,277 bp, which were separated by a pair of inverted repeats (IR) regions of 24,514 bp. The genome contains 123 genes, including 80 protein-coding genes, 8 ribosomal RNA genes, and 35 transfer RNA genes. The overall GC content of the whole genome is 38.0%, and the corresponding values of the LSC, SSC, and IR regions are 35.9%, 31.4%, and 43.1%, respectively. Further phylogenomic analysis showed that S. album and Osyris alba clustered in a clade in Santalales order. Taylor & Francis 2020-01-07 /pmc/articles/PMC7748440/ /pubmed/33366578 http://dx.doi.org/10.1080/23802359.2019.1704199 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Yang, Dejun
Qiu, Qiong
Xu, Linhong
Xu, Yumei
Wang, Yi
The complete chloroplast genome sequence of Santalum album
title The complete chloroplast genome sequence of Santalum album
title_full The complete chloroplast genome sequence of Santalum album
title_fullStr The complete chloroplast genome sequence of Santalum album
title_full_unstemmed The complete chloroplast genome sequence of Santalum album
title_short The complete chloroplast genome sequence of Santalum album
title_sort complete chloroplast genome sequence of santalum album
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748440/
https://www.ncbi.nlm.nih.gov/pubmed/33366578
http://dx.doi.org/10.1080/23802359.2019.1704199
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