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Characterization of the complete chloroplast genome of Angelica dahurica (Apiaceae) as an herb in China

Angelica dahurica is an upright perennial herb that is becoming more and more fashionable in the garden in the world. The complete chloroplast genome of A. dahurica was annotated and studied in this paper. It was a circular molecular genome with a size of 146,918 bp in length, which was composed of...

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Autores principales: Zhang, Rui, Xu, Baohai, Cao, Tianyi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748479/
https://www.ncbi.nlm.nih.gov/pubmed/33366700
http://dx.doi.org/10.1080/23802359.2020.1714493
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author Zhang, Rui
Xu, Baohai
Cao, Tianyi
author_facet Zhang, Rui
Xu, Baohai
Cao, Tianyi
author_sort Zhang, Rui
collection PubMed
description Angelica dahurica is an upright perennial herb that is becoming more and more fashionable in the garden in the world. The complete chloroplast genome of A. dahurica was annotated and studied in this paper. It was a circular molecular genome with a size of 146,918 bp in length, which was composed of four distinct regions such as a large single-copy region of 93,605 bp, a small single-copy region of 17,669 bp and a pair of IR regions of 17,822 bp. We annotated and found comprised 129 genes, including 85 protein-coding genes (PCGs), 36 transfer RNA genes (tRNAs) and eight ribosome RNA genes (rRNAs). The overall nucleotide composition is A of 30.8%, T of 31.7%, C of 19.1% and G of 18.4%, with a total A + T content of the chloroplast genome 62.5% and G + C of 37.5%. Phylogenetic analysis with the reported chloroplast genomes revealed that A. dahurica is most closely related to Angelica gigas in the phylogenetic relationships.
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spelling pubmed-77484792020-12-22 Characterization of the complete chloroplast genome of Angelica dahurica (Apiaceae) as an herb in China Zhang, Rui Xu, Baohai Cao, Tianyi Mitochondrial DNA B Resour Mitogenome Announcement Angelica dahurica is an upright perennial herb that is becoming more and more fashionable in the garden in the world. The complete chloroplast genome of A. dahurica was annotated and studied in this paper. It was a circular molecular genome with a size of 146,918 bp in length, which was composed of four distinct regions such as a large single-copy region of 93,605 bp, a small single-copy region of 17,669 bp and a pair of IR regions of 17,822 bp. We annotated and found comprised 129 genes, including 85 protein-coding genes (PCGs), 36 transfer RNA genes (tRNAs) and eight ribosome RNA genes (rRNAs). The overall nucleotide composition is A of 30.8%, T of 31.7%, C of 19.1% and G of 18.4%, with a total A + T content of the chloroplast genome 62.5% and G + C of 37.5%. Phylogenetic analysis with the reported chloroplast genomes revealed that A. dahurica is most closely related to Angelica gigas in the phylogenetic relationships. Taylor & Francis 2020-01-16 /pmc/articles/PMC7748479/ /pubmed/33366700 http://dx.doi.org/10.1080/23802359.2020.1714493 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Zhang, Rui
Xu, Baohai
Cao, Tianyi
Characterization of the complete chloroplast genome of Angelica dahurica (Apiaceae) as an herb in China
title Characterization of the complete chloroplast genome of Angelica dahurica (Apiaceae) as an herb in China
title_full Characterization of the complete chloroplast genome of Angelica dahurica (Apiaceae) as an herb in China
title_fullStr Characterization of the complete chloroplast genome of Angelica dahurica (Apiaceae) as an herb in China
title_full_unstemmed Characterization of the complete chloroplast genome of Angelica dahurica (Apiaceae) as an herb in China
title_short Characterization of the complete chloroplast genome of Angelica dahurica (Apiaceae) as an herb in China
title_sort characterization of the complete chloroplast genome of angelica dahurica (apiaceae) as an herb in china
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748479/
https://www.ncbi.nlm.nih.gov/pubmed/33366700
http://dx.doi.org/10.1080/23802359.2020.1714493
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