Cargando…
Characterization of the complete chloroplast genome of Angelica dahurica (Apiaceae) as an herb in China
Angelica dahurica is an upright perennial herb that is becoming more and more fashionable in the garden in the world. The complete chloroplast genome of A. dahurica was annotated and studied in this paper. It was a circular molecular genome with a size of 146,918 bp in length, which was composed of...
Autores principales: | , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2020
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748479/ https://www.ncbi.nlm.nih.gov/pubmed/33366700 http://dx.doi.org/10.1080/23802359.2020.1714493 |
_version_ | 1783625120860864512 |
---|---|
author | Zhang, Rui Xu, Baohai Cao, Tianyi |
author_facet | Zhang, Rui Xu, Baohai Cao, Tianyi |
author_sort | Zhang, Rui |
collection | PubMed |
description | Angelica dahurica is an upright perennial herb that is becoming more and more fashionable in the garden in the world. The complete chloroplast genome of A. dahurica was annotated and studied in this paper. It was a circular molecular genome with a size of 146,918 bp in length, which was composed of four distinct regions such as a large single-copy region of 93,605 bp, a small single-copy region of 17,669 bp and a pair of IR regions of 17,822 bp. We annotated and found comprised 129 genes, including 85 protein-coding genes (PCGs), 36 transfer RNA genes (tRNAs) and eight ribosome RNA genes (rRNAs). The overall nucleotide composition is A of 30.8%, T of 31.7%, C of 19.1% and G of 18.4%, with a total A + T content of the chloroplast genome 62.5% and G + C of 37.5%. Phylogenetic analysis with the reported chloroplast genomes revealed that A. dahurica is most closely related to Angelica gigas in the phylogenetic relationships. |
format | Online Article Text |
id | pubmed-7748479 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77484792020-12-22 Characterization of the complete chloroplast genome of Angelica dahurica (Apiaceae) as an herb in China Zhang, Rui Xu, Baohai Cao, Tianyi Mitochondrial DNA B Resour Mitogenome Announcement Angelica dahurica is an upright perennial herb that is becoming more and more fashionable in the garden in the world. The complete chloroplast genome of A. dahurica was annotated and studied in this paper. It was a circular molecular genome with a size of 146,918 bp in length, which was composed of four distinct regions such as a large single-copy region of 93,605 bp, a small single-copy region of 17,669 bp and a pair of IR regions of 17,822 bp. We annotated and found comprised 129 genes, including 85 protein-coding genes (PCGs), 36 transfer RNA genes (tRNAs) and eight ribosome RNA genes (rRNAs). The overall nucleotide composition is A of 30.8%, T of 31.7%, C of 19.1% and G of 18.4%, with a total A + T content of the chloroplast genome 62.5% and G + C of 37.5%. Phylogenetic analysis with the reported chloroplast genomes revealed that A. dahurica is most closely related to Angelica gigas in the phylogenetic relationships. Taylor & Francis 2020-01-16 /pmc/articles/PMC7748479/ /pubmed/33366700 http://dx.doi.org/10.1080/23802359.2020.1714493 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Zhang, Rui Xu, Baohai Cao, Tianyi Characterization of the complete chloroplast genome of Angelica dahurica (Apiaceae) as an herb in China |
title | Characterization of the complete chloroplast genome of Angelica dahurica (Apiaceae) as an herb in China |
title_full | Characterization of the complete chloroplast genome of Angelica dahurica (Apiaceae) as an herb in China |
title_fullStr | Characterization of the complete chloroplast genome of Angelica dahurica (Apiaceae) as an herb in China |
title_full_unstemmed | Characterization of the complete chloroplast genome of Angelica dahurica (Apiaceae) as an herb in China |
title_short | Characterization of the complete chloroplast genome of Angelica dahurica (Apiaceae) as an herb in China |
title_sort | characterization of the complete chloroplast genome of angelica dahurica (apiaceae) as an herb in china |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748479/ https://www.ncbi.nlm.nih.gov/pubmed/33366700 http://dx.doi.org/10.1080/23802359.2020.1714493 |
work_keys_str_mv | AT zhangrui characterizationofthecompletechloroplastgenomeofangelicadahuricaapiaceaeasanherbinchina AT xubaohai characterizationofthecompletechloroplastgenomeofangelicadahuricaapiaceaeasanherbinchina AT caotianyi characterizationofthecompletechloroplastgenomeofangelicadahuricaapiaceaeasanherbinchina |