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Characterization of the complete chloroplast genome of Pterocarya stenoptera, a tall deciduous tree of the family Juglandaceae

Pterocarya stenoptera, also called Chinese wingnut in China, is a tall deciduous tree of the walnut family (Juglandaceae). P. stenoptera is one of the most popular shade trees owing to its tall and graceful form and rapid growth rate. In the present study, the chloroplast genome of P. stenoptera was...

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Autores principales: Yang, Zhongyi, Wang, Yilu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748486/
https://www.ncbi.nlm.nih.gov/pubmed/33366746
http://dx.doi.org/10.1080/23802359.2020.1715874
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author Yang, Zhongyi
Wang, Yilu
author_facet Yang, Zhongyi
Wang, Yilu
author_sort Yang, Zhongyi
collection PubMed
description Pterocarya stenoptera, also called Chinese wingnut in China, is a tall deciduous tree of the walnut family (Juglandaceae). P. stenoptera is one of the most popular shade trees owing to its tall and graceful form and rapid growth rate. In the present study, the chloroplast genome of P. stenoptera was assembled and analyzed phylogenetically. The chloroplast genome of P. stenoptera is 160,212 bp in length, with a large single-copy region (LSC) of 88,724 bp, a small single-copy region (SSC) of 18,396 bp, and a pair of inverted repeat regions (IRs) of 26,046 bp, forming a typical quadripartite structure. A total of 130 genes are annotated from the chloroplast genome of P. stenoptera, including 82 protein-coding genes, 40 transfer RNA (tRNAs) genes, and 8 ribosomal RNA (rRNAs) genes. The GC content of the chloroplast genome is 36.2%. Phylogenetic analysis based on the common proteins from P. stenoptera and 14 related species confirmed the close relationship between Pterocarya and Juglans.
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spelling pubmed-77484862020-12-22 Characterization of the complete chloroplast genome of Pterocarya stenoptera, a tall deciduous tree of the family Juglandaceae Yang, Zhongyi Wang, Yilu Mitochondrial DNA B Resour Mitogenome Announcement Pterocarya stenoptera, also called Chinese wingnut in China, is a tall deciduous tree of the walnut family (Juglandaceae). P. stenoptera is one of the most popular shade trees owing to its tall and graceful form and rapid growth rate. In the present study, the chloroplast genome of P. stenoptera was assembled and analyzed phylogenetically. The chloroplast genome of P. stenoptera is 160,212 bp in length, with a large single-copy region (LSC) of 88,724 bp, a small single-copy region (SSC) of 18,396 bp, and a pair of inverted repeat regions (IRs) of 26,046 bp, forming a typical quadripartite structure. A total of 130 genes are annotated from the chloroplast genome of P. stenoptera, including 82 protein-coding genes, 40 transfer RNA (tRNAs) genes, and 8 ribosomal RNA (rRNAs) genes. The GC content of the chloroplast genome is 36.2%. Phylogenetic analysis based on the common proteins from P. stenoptera and 14 related species confirmed the close relationship between Pterocarya and Juglans. Taylor & Francis 2020-01-22 /pmc/articles/PMC7748486/ /pubmed/33366746 http://dx.doi.org/10.1080/23802359.2020.1715874 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Yang, Zhongyi
Wang, Yilu
Characterization of the complete chloroplast genome of Pterocarya stenoptera, a tall deciduous tree of the family Juglandaceae
title Characterization of the complete chloroplast genome of Pterocarya stenoptera, a tall deciduous tree of the family Juglandaceae
title_full Characterization of the complete chloroplast genome of Pterocarya stenoptera, a tall deciduous tree of the family Juglandaceae
title_fullStr Characterization of the complete chloroplast genome of Pterocarya stenoptera, a tall deciduous tree of the family Juglandaceae
title_full_unstemmed Characterization of the complete chloroplast genome of Pterocarya stenoptera, a tall deciduous tree of the family Juglandaceae
title_short Characterization of the complete chloroplast genome of Pterocarya stenoptera, a tall deciduous tree of the family Juglandaceae
title_sort characterization of the complete chloroplast genome of pterocarya stenoptera, a tall deciduous tree of the family juglandaceae
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748486/
https://www.ncbi.nlm.nih.gov/pubmed/33366746
http://dx.doi.org/10.1080/23802359.2020.1715874
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