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The complete chloroplast genome sequence of Populus mexicana (Salicaceae)

The complete chloroplast genome sequence of Populus mexicana was characterized from Illumina pair-end sequencing. The chloroplast genome of P. mexicana was 156,188 bp in length, containing a large single-copy region (LSC) of 86,871 bp, a small single-copy region (SSC) of 16,559 bp, and 2 inverted re...

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Autor principal: Hou, Zhe
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748492/
https://www.ncbi.nlm.nih.gov/pubmed/33366473
http://dx.doi.org/10.1080/23802359.2019.1698373
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author Hou, Zhe
author_facet Hou, Zhe
author_sort Hou, Zhe
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description The complete chloroplast genome sequence of Populus mexicana was characterized from Illumina pair-end sequencing. The chloroplast genome of P. mexicana was 156,188 bp in length, containing a large single-copy region (LSC) of 86,871 bp, a small single-copy region (SSC) of 16,559 bp, and 2 inverted repeat (IR) regions of 26,377 bp. The overall GC content is 36.74%, while the corresponding values of the LSC, SSC, and IR regions are 64.8, 69.3, and 60.3, respectively. The genome contains 111 complete genes, including 72 protein-coding genes (62 protein-coding gene species), 31 tRNA genes (29 tRNA species), and 8 rRNA genes (4 rRNA species). The neighbor-joining phylogenetic analysis showed that P. mexicana and Populus fremontii clustered together as sisters to other Populus species.
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spelling pubmed-77484922020-12-22 The complete chloroplast genome sequence of Populus mexicana (Salicaceae) Hou, Zhe Mitochondrial DNA B Resour Mitogenome Announcement The complete chloroplast genome sequence of Populus mexicana was characterized from Illumina pair-end sequencing. The chloroplast genome of P. mexicana was 156,188 bp in length, containing a large single-copy region (LSC) of 86,871 bp, a small single-copy region (SSC) of 16,559 bp, and 2 inverted repeat (IR) regions of 26,377 bp. The overall GC content is 36.74%, while the corresponding values of the LSC, SSC, and IR regions are 64.8, 69.3, and 60.3, respectively. The genome contains 111 complete genes, including 72 protein-coding genes (62 protein-coding gene species), 31 tRNA genes (29 tRNA species), and 8 rRNA genes (4 rRNA species). The neighbor-joining phylogenetic analysis showed that P. mexicana and Populus fremontii clustered together as sisters to other Populus species. Taylor & Francis 2019-12-12 /pmc/articles/PMC7748492/ /pubmed/33366473 http://dx.doi.org/10.1080/23802359.2019.1698373 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Hou, Zhe
The complete chloroplast genome sequence of Populus mexicana (Salicaceae)
title The complete chloroplast genome sequence of Populus mexicana (Salicaceae)
title_full The complete chloroplast genome sequence of Populus mexicana (Salicaceae)
title_fullStr The complete chloroplast genome sequence of Populus mexicana (Salicaceae)
title_full_unstemmed The complete chloroplast genome sequence of Populus mexicana (Salicaceae)
title_short The complete chloroplast genome sequence of Populus mexicana (Salicaceae)
title_sort complete chloroplast genome sequence of populus mexicana (salicaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748492/
https://www.ncbi.nlm.nih.gov/pubmed/33366473
http://dx.doi.org/10.1080/23802359.2019.1698373
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