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The complete chloroplast genome sequence of Populus mexicana (Salicaceae)
The complete chloroplast genome sequence of Populus mexicana was characterized from Illumina pair-end sequencing. The chloroplast genome of P. mexicana was 156,188 bp in length, containing a large single-copy region (LSC) of 86,871 bp, a small single-copy region (SSC) of 16,559 bp, and 2 inverted re...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Taylor & Francis
2019
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748492/ https://www.ncbi.nlm.nih.gov/pubmed/33366473 http://dx.doi.org/10.1080/23802359.2019.1698373 |
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author | Hou, Zhe |
author_facet | Hou, Zhe |
author_sort | Hou, Zhe |
collection | PubMed |
description | The complete chloroplast genome sequence of Populus mexicana was characterized from Illumina pair-end sequencing. The chloroplast genome of P. mexicana was 156,188 bp in length, containing a large single-copy region (LSC) of 86,871 bp, a small single-copy region (SSC) of 16,559 bp, and 2 inverted repeat (IR) regions of 26,377 bp. The overall GC content is 36.74%, while the corresponding values of the LSC, SSC, and IR regions are 64.8, 69.3, and 60.3, respectively. The genome contains 111 complete genes, including 72 protein-coding genes (62 protein-coding gene species), 31 tRNA genes (29 tRNA species), and 8 rRNA genes (4 rRNA species). The neighbor-joining phylogenetic analysis showed that P. mexicana and Populus fremontii clustered together as sisters to other Populus species. |
format | Online Article Text |
id | pubmed-7748492 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77484922020-12-22 The complete chloroplast genome sequence of Populus mexicana (Salicaceae) Hou, Zhe Mitochondrial DNA B Resour Mitogenome Announcement The complete chloroplast genome sequence of Populus mexicana was characterized from Illumina pair-end sequencing. The chloroplast genome of P. mexicana was 156,188 bp in length, containing a large single-copy region (LSC) of 86,871 bp, a small single-copy region (SSC) of 16,559 bp, and 2 inverted repeat (IR) regions of 26,377 bp. The overall GC content is 36.74%, while the corresponding values of the LSC, SSC, and IR regions are 64.8, 69.3, and 60.3, respectively. The genome contains 111 complete genes, including 72 protein-coding genes (62 protein-coding gene species), 31 tRNA genes (29 tRNA species), and 8 rRNA genes (4 rRNA species). The neighbor-joining phylogenetic analysis showed that P. mexicana and Populus fremontii clustered together as sisters to other Populus species. Taylor & Francis 2019-12-12 /pmc/articles/PMC7748492/ /pubmed/33366473 http://dx.doi.org/10.1080/23802359.2019.1698373 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Hou, Zhe The complete chloroplast genome sequence of Populus mexicana (Salicaceae) |
title | The complete chloroplast genome sequence of Populus mexicana (Salicaceae) |
title_full | The complete chloroplast genome sequence of Populus mexicana (Salicaceae) |
title_fullStr | The complete chloroplast genome sequence of Populus mexicana (Salicaceae) |
title_full_unstemmed | The complete chloroplast genome sequence of Populus mexicana (Salicaceae) |
title_short | The complete chloroplast genome sequence of Populus mexicana (Salicaceae) |
title_sort | complete chloroplast genome sequence of populus mexicana (salicaceae) |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748492/ https://www.ncbi.nlm.nih.gov/pubmed/33366473 http://dx.doi.org/10.1080/23802359.2019.1698373 |
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