The complete chloroplast genome sequence of Hippophae rhamnoides subsp. sinensis

The complete chloroplast genome sequence of Hippophae rahmnoides subsp. sinensis was characterized from Illumina pair-end sequencing. The chloroplast genome of H. rahmnoides subsp. sinensis was 156,355 bp in length, containing a large single-copy region (LSC) of 84,002 bp, a small single-copy region...

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Autores principales: Diao, Songfeng, Zhang, Guoyun, He, Caiyun, Duan, Aiguo, Zhang, Jianguo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748493/
https://www.ncbi.nlm.nih.gov/pubmed/33366837
http://dx.doi.org/10.1080/23802359.2020.1719932
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author Diao, Songfeng
Zhang, Guoyun
He, Caiyun
Duan, Aiguo
Zhang, Jianguo
author_facet Diao, Songfeng
Zhang, Guoyun
He, Caiyun
Duan, Aiguo
Zhang, Jianguo
author_sort Diao, Songfeng
collection PubMed
description The complete chloroplast genome sequence of Hippophae rahmnoides subsp. sinensis was characterized from Illumina pair-end sequencing. The chloroplast genome of H. rahmnoides subsp. sinensis was 156,355 bp in length, containing a large single-copy region (LSC) of 84,002 bp, a small single-copy region (SSC) of 19,055 bp, and two inverted repeat (IR) regions of 26,649 bp. The overall GC content is 36.6%, while the corresponding values of the LSC, SSC, and IR regions are 64.5%, 69.2%, and 60.1%, respectively. The genome contains 131 complete genes, including 88 protein-coding genes, 38 tRNA genes (29 tRNA species), and 8 rRNA genes (4 rRNA species). The neighbour-joining phylogenetic analysis showed that H. rahmnoides subsp. sinensis and H. rahmnoides clustered together as sisters to other H. rahmnoides species.
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spelling pubmed-77484932020-12-22 The complete chloroplast genome sequence of Hippophae rhamnoides subsp. sinensis Diao, Songfeng Zhang, Guoyun He, Caiyun Duan, Aiguo Zhang, Jianguo Mitochondrial DNA B Resour Mitogenome Announcement The complete chloroplast genome sequence of Hippophae rahmnoides subsp. sinensis was characterized from Illumina pair-end sequencing. The chloroplast genome of H. rahmnoides subsp. sinensis was 156,355 bp in length, containing a large single-copy region (LSC) of 84,002 bp, a small single-copy region (SSC) of 19,055 bp, and two inverted repeat (IR) regions of 26,649 bp. The overall GC content is 36.6%, while the corresponding values of the LSC, SSC, and IR regions are 64.5%, 69.2%, and 60.1%, respectively. The genome contains 131 complete genes, including 88 protein-coding genes, 38 tRNA genes (29 tRNA species), and 8 rRNA genes (4 rRNA species). The neighbour-joining phylogenetic analysis showed that H. rahmnoides subsp. sinensis and H. rahmnoides clustered together as sisters to other H. rahmnoides species. Taylor & Francis 2020-02-03 /pmc/articles/PMC7748493/ /pubmed/33366837 http://dx.doi.org/10.1080/23802359.2020.1719932 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Diao, Songfeng
Zhang, Guoyun
He, Caiyun
Duan, Aiguo
Zhang, Jianguo
The complete chloroplast genome sequence of Hippophae rhamnoides subsp. sinensis
title The complete chloroplast genome sequence of Hippophae rhamnoides subsp. sinensis
title_full The complete chloroplast genome sequence of Hippophae rhamnoides subsp. sinensis
title_fullStr The complete chloroplast genome sequence of Hippophae rhamnoides subsp. sinensis
title_full_unstemmed The complete chloroplast genome sequence of Hippophae rhamnoides subsp. sinensis
title_short The complete chloroplast genome sequence of Hippophae rhamnoides subsp. sinensis
title_sort complete chloroplast genome sequence of hippophae rhamnoides subsp. sinensis
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748493/
https://www.ncbi.nlm.nih.gov/pubmed/33366837
http://dx.doi.org/10.1080/23802359.2020.1719932
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