Cargando…

Complete mitochondrail genome of Corydoras agassizii

We reported the complete mitochondrial genome yielded using next-generation sequencing of Corydoras agassizii in this study. The total length of the mitochondrial genome is 16,562 bp, with the base composition of 32.6% A, 25.9% T, 26.8% C, and 14.7% G, in several. It contains two rRNA genes, 22 tRNA...

Descripción completa

Detalles Bibliográficos
Autores principales: Lv, Ligang, Su, Hang, Xu, Baohong, Liu, Qiaoling, Xiao, Tiaoyi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748502/
https://www.ncbi.nlm.nih.gov/pubmed/33366722
http://dx.doi.org/10.1080/23802359.2020.1715277
_version_ 1783625126439288832
author Lv, Ligang
Su, Hang
Xu, Baohong
Liu, Qiaoling
Xiao, Tiaoyi
author_facet Lv, Ligang
Su, Hang
Xu, Baohong
Liu, Qiaoling
Xiao, Tiaoyi
author_sort Lv, Ligang
collection PubMed
description We reported the complete mitochondrial genome yielded using next-generation sequencing of Corydoras agassizii in this study. The total length of the mitochondrial genome is 16,562 bp, with the base composition of 32.6% A, 25.9% T, 26.8% C, and 14.7% G, in several. It contains two rRNA genes, 22 tRNA genes, 13 protein-coding genes, and a 945 bp non-coding control region (D-loop region). The sequence of these genes is consistent with that found in the Siluriformes. The complete mitogenomes of C. agassizii and other 17 species of fish were constructed by phylogenetic analysis using Neighbour-Joining method. The topological structure indicated that species participating in the analysis belong to three groups (Siluridae, Loricariidae, and Callichthyidae) of nine genera, and the C. agassizii was clustered with other species from genus Corydoras. The external morphological characteristics of C. agassizii are consistent with the results of molecular classification, so the mitogenome can be used to identify Corydoras species in the future.
format Online
Article
Text
id pubmed-7748502
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher Taylor & Francis
record_format MEDLINE/PubMed
spelling pubmed-77485022020-12-22 Complete mitochondrail genome of Corydoras agassizii Lv, Ligang Su, Hang Xu, Baohong Liu, Qiaoling Xiao, Tiaoyi Mitochondrial DNA B Resour Mitogenome Announcement We reported the complete mitochondrial genome yielded using next-generation sequencing of Corydoras agassizii in this study. The total length of the mitochondrial genome is 16,562 bp, with the base composition of 32.6% A, 25.9% T, 26.8% C, and 14.7% G, in several. It contains two rRNA genes, 22 tRNA genes, 13 protein-coding genes, and a 945 bp non-coding control region (D-loop region). The sequence of these genes is consistent with that found in the Siluriformes. The complete mitogenomes of C. agassizii and other 17 species of fish were constructed by phylogenetic analysis using Neighbour-Joining method. The topological structure indicated that species participating in the analysis belong to three groups (Siluridae, Loricariidae, and Callichthyidae) of nine genera, and the C. agassizii was clustered with other species from genus Corydoras. The external morphological characteristics of C. agassizii are consistent with the results of molecular classification, so the mitogenome can be used to identify Corydoras species in the future. Taylor & Francis 2020-01-20 /pmc/articles/PMC7748502/ /pubmed/33366722 http://dx.doi.org/10.1080/23802359.2020.1715277 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Lv, Ligang
Su, Hang
Xu, Baohong
Liu, Qiaoling
Xiao, Tiaoyi
Complete mitochondrail genome of Corydoras agassizii
title Complete mitochondrail genome of Corydoras agassizii
title_full Complete mitochondrail genome of Corydoras agassizii
title_fullStr Complete mitochondrail genome of Corydoras agassizii
title_full_unstemmed Complete mitochondrail genome of Corydoras agassizii
title_short Complete mitochondrail genome of Corydoras agassizii
title_sort complete mitochondrail genome of corydoras agassizii
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748502/
https://www.ncbi.nlm.nih.gov/pubmed/33366722
http://dx.doi.org/10.1080/23802359.2020.1715277
work_keys_str_mv AT lvligang completemitochondrailgenomeofcorydorasagassizii
AT suhang completemitochondrailgenomeofcorydorasagassizii
AT xubaohong completemitochondrailgenomeofcorydorasagassizii
AT liuqiaoling completemitochondrailgenomeofcorydorasagassizii
AT xiaotiaoyi completemitochondrailgenomeofcorydorasagassizii