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Complete mitochondrail genome of Corydoras agassizii
We reported the complete mitochondrial genome yielded using next-generation sequencing of Corydoras agassizii in this study. The total length of the mitochondrial genome is 16,562 bp, with the base composition of 32.6% A, 25.9% T, 26.8% C, and 14.7% G, in several. It contains two rRNA genes, 22 tRNA...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748502/ https://www.ncbi.nlm.nih.gov/pubmed/33366722 http://dx.doi.org/10.1080/23802359.2020.1715277 |
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author | Lv, Ligang Su, Hang Xu, Baohong Liu, Qiaoling Xiao, Tiaoyi |
author_facet | Lv, Ligang Su, Hang Xu, Baohong Liu, Qiaoling Xiao, Tiaoyi |
author_sort | Lv, Ligang |
collection | PubMed |
description | We reported the complete mitochondrial genome yielded using next-generation sequencing of Corydoras agassizii in this study. The total length of the mitochondrial genome is 16,562 bp, with the base composition of 32.6% A, 25.9% T, 26.8% C, and 14.7% G, in several. It contains two rRNA genes, 22 tRNA genes, 13 protein-coding genes, and a 945 bp non-coding control region (D-loop region). The sequence of these genes is consistent with that found in the Siluriformes. The complete mitogenomes of C. agassizii and other 17 species of fish were constructed by phylogenetic analysis using Neighbour-Joining method. The topological structure indicated that species participating in the analysis belong to three groups (Siluridae, Loricariidae, and Callichthyidae) of nine genera, and the C. agassizii was clustered with other species from genus Corydoras. The external morphological characteristics of C. agassizii are consistent with the results of molecular classification, so the mitogenome can be used to identify Corydoras species in the future. |
format | Online Article Text |
id | pubmed-7748502 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77485022020-12-22 Complete mitochondrail genome of Corydoras agassizii Lv, Ligang Su, Hang Xu, Baohong Liu, Qiaoling Xiao, Tiaoyi Mitochondrial DNA B Resour Mitogenome Announcement We reported the complete mitochondrial genome yielded using next-generation sequencing of Corydoras agassizii in this study. The total length of the mitochondrial genome is 16,562 bp, with the base composition of 32.6% A, 25.9% T, 26.8% C, and 14.7% G, in several. It contains two rRNA genes, 22 tRNA genes, 13 protein-coding genes, and a 945 bp non-coding control region (D-loop region). The sequence of these genes is consistent with that found in the Siluriformes. The complete mitogenomes of C. agassizii and other 17 species of fish were constructed by phylogenetic analysis using Neighbour-Joining method. The topological structure indicated that species participating in the analysis belong to three groups (Siluridae, Loricariidae, and Callichthyidae) of nine genera, and the C. agassizii was clustered with other species from genus Corydoras. The external morphological characteristics of C. agassizii are consistent with the results of molecular classification, so the mitogenome can be used to identify Corydoras species in the future. Taylor & Francis 2020-01-20 /pmc/articles/PMC7748502/ /pubmed/33366722 http://dx.doi.org/10.1080/23802359.2020.1715277 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Lv, Ligang Su, Hang Xu, Baohong Liu, Qiaoling Xiao, Tiaoyi Complete mitochondrail genome of Corydoras agassizii |
title | Complete mitochondrail genome of Corydoras agassizii |
title_full | Complete mitochondrail genome of Corydoras agassizii |
title_fullStr | Complete mitochondrail genome of Corydoras agassizii |
title_full_unstemmed | Complete mitochondrail genome of Corydoras agassizii |
title_short | Complete mitochondrail genome of Corydoras agassizii |
title_sort | complete mitochondrail genome of corydoras agassizii |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748502/ https://www.ncbi.nlm.nih.gov/pubmed/33366722 http://dx.doi.org/10.1080/23802359.2020.1715277 |
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